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bxp() (and hence boxplot) now respects in-line graphical parameters 'xaxp'/'yaxp' as appropriate. (PR#11463)
barplot(log = "y") failed if there were NAs in the 'height' argument. (PR#11585)
pbeta() is more accurate in some cases with extreme values of ncp. (PR#11277).
Calling lapply() with certain primitives was not handling method dispatch correctly for is.numeric(), is.matrix(), is.array(), log() and the Math2 group. This affected data.matrix() which incorrectly regarded "Date" and "POSIXct" objects as numeric, and has been adjusted to still do sodo so as exceptions.
The use of multiple packages in 'LinkingTo' works again, and now works when the dependent packages are in libraries loaded by R but not by R --vanilla.