This blog is updated daily.
A general description is here.
There is now support for LLVM clang 15 on Linux, which defaults to position-independent (PIE) executables whereas ‘gfortran’ does not.
Many small changes to ease compilation (and suppress warnings) with LLVM ‘clang’ 15.
Have ‘is.finite()’, ‘is.infinite()’, and ‘is.nan()’ methods for ‘POSIXlt’ date-time objects.
Non-finite ‘POSIXlt’ now correctly coerce to ‘Date’ and ‘POSIXct’; following up on the extension to ‘format()’ them correctly.
Similarly, the ‘as.character.hexmode()’ and ‘*.octmode()’ methods also behave as ‘good citizen’ methods and back compatibility option ‘keepStr = TRUE’.
‘as.character(<POSIXt>)’ now behaves more in line with the methods for atomic vectors such as numbers, and is no longer influenced by ‘options()’. Ditto for ‘as.character(<Date>)’. Use of ‘as.character(*, format = .)’ now warns.
Non-finite ‘POSIXlt’ now correctly coerce to ‘Date’; following up on the extension to ‘format()’ them correctly.
‘tools::Rd2HTML()’ and ‘tools::Rd2latex()’ no longer split \arguments and \value lists at Rd comments.
Performance of ‘package_dependencies()’ has been improved for cases when the number of dependencies is large.
Strings newly created by ‘gsub()’, ‘sub()’ and ‘strsplit()’, when any of the inputs is marked as ‘"bytes"’, are also marked as ‘"bytes"’. This reduces the risk of creating invalid strings and accidental substitution of bytes deemed invalid.
Support for ‘readLines(encoding="bytes")’ has been added to allow processing special text files byte-by-byte, without creating invalid strings.
‘iconv(from="")’ now takes into account any declared encoding of the input elements and uses it in preference to the native encoding. This reduces the risk of accidental creation of invalid strings, particularly when different elements of the input have different encoding (including ‘"bytes"’).
Files can now be extracted even from very large zip archives (PR#18390, thanks to Martin Jakt).
The performance of ‘grep()’, ‘sub()’, ‘gsub()’ and ‘strsplit()’ has been improved, particularly with ‘perl = TRUE’ and ‘fixed = TRUE’. Use of ‘useBytes = TRUE’ for performance reasons should no longer be needed and is discouraged: it may lead to incorrect results.
Non-ASCII characters are now properly displayed on Windows in windows created using GraphApp via e.g. ‘winDialogString’ thanks to a workaround for an at least surprising Windows behavior with UTF-8 as the system encoding (PR#18382).
Find and replace operations work again in the script editor in ‘Rgui’ on Windows.
Computation of window size based on requested client size in GraphApp when running in a multi-byte locale on Windows has been fixed (regression in R 4.2.0 for users of systems where R 4.1 used a single-byte locale). ‘Rgui’ again respects the number of console rows and columns given in ‘Rconsole’ file.
‘Rterm’ support for ‘Alt+xxx’ sequences has been fixed to produce the corresponding character (only) once. This fixes pasting text with tilde on Italian keyboard (PR#18391).
Non-ASCII characters are now properly displayed on Windows in windows
created using GraphApp via e.g. ‘winDialogString’ thanks to a
workaround for an at least surprising Windows behavior with UTF-8 as
the system encoding (PR#18382).
Find and replace operations work again in the script editor in ‘Rgui’
on Windows.
Computation of window size based on requested client size in GraphApp
when running in a multi-byte locale on Windows has been fixed
(regression in R 4.2.0 for users of systems where R 4.1 used a
single-byte locale). ‘Rgui’ again respects the number of console rows
and columns given in ‘Rconsole’ file.
‘Rterm’ support for ‘Alt+xxx’ sequences has been fixed to produce the
corresponding character (only) once. This fixes pasting text with tilde
on Italian keyboard (PR#18391).
‘as.character(<POSIXt>)’ now behaves more in line with the methods for atomic vectors such as numbers, and is no longer influenced by ‘options()’.
‘as.POSIXlt(x)’ now also works with very large dates ‘x’, fixing PR#18401 reported by Hannes Mühleisen.
There is initial support for C++23 as several compilers are now supporting ‘-std=c++23’ or ‘-std=c++2b’ or similar. As for C++20, there no additional ‘configure’ checks for C++23 features beyond a check that the compiler reports a ‘__cplusplus’ value greater than that in the C++20 standard. C++ feature tests should be used.
‘USE_FC_LEN_T’ is the default: this uses the correct (compiler-dependent) prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of many such calls - see ‘Writing R Extensions’ §6.6.1.
There is initial support for C++23 as several compilers are now supporting ‘-std=c++23’ or ‘-std=c++2b’ or similar. As for C++20, there no additional ‘configure’ checks for C++23 features beyond a check that the compoiler reports a ‘__cplusplus’ value greater than that in the C++20 standard. C++ feature tests should be used.
There is now support for LLVM clang 15 on Linux, which defaults to position-independent (PIE) executables whereas ‘gfortran’ does not. See the “R Installation and Administration” manual for the setting required.
‘USE_FC_LEN_T’ is the default: this uses the correct (compiler-dependent) prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of many such calls - see ‘Writing R Extensions’ §6.6.1.
## g++ 11 supported c++23. ## 2022-09 Recent LLVM (>= 13?) and Apple (>= 13?) clang support c++2b.
There is initial support for C++23 as several compilers are now supporting ‘-std=c++23’ or ‘-std=c++2b’ or similar. As for C++20, there no additional ‘configure’ checks for C++23 features beyond a check that the compoiler reports a ‘__cplusplus’ value greater than that in the C++20 standard.
The LaTeX style for producing the PDF manuals, ‘Rd.sty’, now loads the standard ‘amsmath’, ‘amsfonts’ and ‘amssymb’ packages for greater coverage of math commands in the Rd \eqn and \deqn macros. The \mathscr LaTeX command is also provided (via the ‘mathrsfs’ package, if available, or the ‘amsfonts’ bundle otherwise), fulfilling the wish of PR#18398.
There is initial support for C++23 as several compilers are now supporting ‘-std=c++23’ or ‘-std=c++2b’ or similar. There are as yet no additional ‘configure’ checks for C++23 features.
Plain-text help (‘tools::Rd2txt()’) now preserves an initial blank line for text following description list items.
‘tools::Rd2latex()’ now correctly handles optional text outside \items of argument lists.
‘qqplot(x, y, ...)’ gains ‘conf.level’ and ‘conf.args’ arguments for computing and plotting a confidence band for the treatment function transforming the distribution of ‘x’ into the distribution of ‘y ’ (Switzer, 1976, Biometrika). Contributed by Torsten Hothorn.
(macOS) The run-time check for libraries from XQuartz for X11 and Tcl/Tk no longer uses ‘otool’ from the Apple Developer Tools (PR#18400).
On Windows, environment variable ‘R_LIBCURL_SSL_REVOKE_BEST_EFFORT’ can be used to switch to only ‘best-effort’ SSL certificate revocation checks with the default ‘"libcurl"’ download method. This reduces security, but may be needed for downloads to work with MITM proxies (PR#18379).
The detection of dependent libraries for X11 and Tcl/Tk at run-time on
macOS no longer requires ‘otool’ from the Apple Developer Tools
(PR#18400).
The detection of dependent libraries for X11 and Tcl/Tk at run-time on macOS no longer requires ‘otool’ from the Apple Developer Tools (PR#18400).
‘Rterm’ support for ‘Alt+xxx’ sequences has been fixed to produce the corresponding character (only) once. This fixes pasting text with tilde on Italian keyboard (PR#18391).
Computation of window size based on requested client size in GraphApp when running in a multi-byte locale on Windows has been fixed (regression in R 4.2.0 for users of systems where R 4.1 used a single-byte locale). ‘Rgui’ again respects the number of console rows and columns given in ‘Rconsole’ file.
‘poly(x, n)’ now works again (and is now documented) when ‘x’ is a
‘"Date"’ or ‘"POSIXct"’ object, or of another class while fulfilling
‘mode(x) == "numeric"’. This also enables ‘poly(x, *, raw=TRUE)’ for
such variables. Reported by Michael Chirico to R-devel.
‘source("")’ and ‘source(character())’ now give more helpful error
messages.
‘poly(x, n)’ now works again (and is now documented) when ‘x’ is a ‘"Date"’ or ‘"POSIXct"’ object, or of another class while fulfilling ‘mode(x) == "numeric"’. This also enables ‘poly(x, *, raw=TRUE)’ for such variables. Reported by Michael Chirico to R-devel.
‘source("")’ and ‘source(character())’ now give more helpful error messages.
Find and replace operations work again in the script editor in ‘Rgui’ on Windows.
User-defined Rd macro definitions can now span multiple lines, thanks to a patch from Duncan Murdoch. Previously, the Rd parser silently ignored everything after the first line.
‘ordered(levels = *)’ (missing ‘x’) now works analogously to ‘factor(, ordered=TRUE)’; reported (with fix) by Achim Zeileis in PR#18389.
‘ordered(levels = *)’ (missing ‘x’) now works analogously to ‘factor(, ordered=TRUE)’; reported (with fix) by Achim Zeilis in PR#18389.
‘R CMD check’ can optionally (but included in ‘--as-cran’) check whether HTML math rendering via KaTeX works for the package ‘.Rd’ files.
‘R CMD check --as-cran’ set ‘_R_CHECK_TIMINGS_’ too late to have the
intended effect.
‘R CMD check --as-cran’ set ‘_R_CHECK_TIMINGS_’ too late to have the intended effect.
‘_R_CHECK_TIMINGS_’ defaults to a value from the environment even for ‘R CMD check --as-cran’; this allows for exceptionally fast or slow platforms.
It now applies to checking PDF and HTML versions of the manuals, and ‘checking CRAN incoming feasibility’.
‘R CMD check --as-cran’ set ‘_R_CHECK_TIMINGS_’ too late to have the intended effect.
‘poly(x, n)’ now works again (and is now documented) when ‘x’ is a ‘"Date"’ or ‘"POSIXct"’ object, or of another class while fulfilling ‘mode(x) == "numeric"’. This also enables ‘poly(x, *, raw=TRUE)’ for such variables. Reported by Michael Chirico to R-devel.
Non-ASCII characters are now properly displayed on Windows in windows created using GraphApp via e.g. ‘winDialogString’ thanks to a workaround for an at least surprising Windows behavior with UTF-8 as the system encoding (PR#18382).
The deprecated legacy typedefs of ‘Sint’ and ‘Sfloat’ in header ‘R.h’ are no longer defined, and that header no longer includes header ‘limits.h’ from C nor ‘climits’ from C++.
‘source("")’ and ‘source(character())’ now give more helpful error messages.
One can now read also byte ‘FF’ from a clipboard connection (PR#18385).
On ‘aarch64’ (aka ‘arm64’) platforms such as Macs with “Apple silicon” (‘M1’), ‘configure’ now chooses ‘-fPIC’ by default (instead of ‘-fpic’), as desired in PR#18326.
On Windows, environment variable ‘R_LIBCURL_SSL_REVOKE_BEST_EFFORT’ can be used to switch to only best-effort revocation checks with the default ‘"libcurl"’ download method. This reduces security, but may be needed for downloads to work with MITM proxies (PR#18379).
‘write.table()’, ‘write.csv()’ and ‘write.csv2()’ restore their numerical precision (internal equivalent of ‘digits = 15’) after an interrupt (PR#18384).
On ‘aarch64’ (aka \sampearm64) platforms such as Macs with “Apple silicon” (‘M1’), ‘configure’ now chooses ‘-fPIC’ by default (instead of ‘-fpic’), as desired in PR#18326.
‘poly(x, n)’ now works again, now documented, when ‘x’ is a ‘"Date"’ or ‘"POSIXct"’ object, or of another class while fulfilling ‘mode(x) == "numeric"’. This also enables ‘poly(x, *, raw=TRUE)’ for such variables. Reported by Michael Chirico to R-devel.
On Windows, environment variable ‘R_LIBCURL_SSL_REVOKE_BEST_EFFORT’ can be used to switch to only best effort revocation checks with the default ‘"libcurl"’ download method. This reduces security, but may be needed for downloads to work with MITM proxies (PR#18379).
‘tools::Rdiff(useDiff = TRUE)’ checks for the presence of an external ‘diff’ command and switches to ‘useDiff = FALSE’ if none is found. This allows ‘R CMD Rdiff’ to always work.
‘write.table’, ‘write.csv’ and ‘write.csv2’ restore their numerical precision (internal equivalent of ‘digits= 15’) after an interrupt (PR#18384).
Support in ‘tools::Rdiff()’ for comparing uncompressed PDF files is further reduced - see its help page.
‘apropos()’ gains an argument ‘dot_internals’ which is used by the completion (‘help(rcompgen)’) engine to also see ‘base’ internals such as ‘.POSIXct()’.
The deprecated legacy typedefs of ‘Sint’ and ‘Sfloat’ in header ‘R.h’
can be excluded by defining macro ‘NO_S_TYPEDEFS’ before including the
header. This is defined when using ‘R CMD check --as-cran’ or by
defining the environment variable ‘_R_NO_S_TYPEDEFS_’ to a true value
when running ‘R CMD check’.
If these are excluded, ‘R.h’ no longer includes header ‘limits.h’ from C nor ‘climits’ from C++.
[This is scheduled to become the default on 2022-08-10.]
The deprecated legacy typedefs of ‘Sint’ and ‘Sfloat’ in header ‘R.h’ are no longer defined, and that header no longer includes header ‘limits.h’ from C nor ‘climits’ from C++.
[This has been postponed to 2022-08-10, after the CRAN summer shutdown.]
Support in ‘tools::Rdiff’ for uncompressed PDF files is further reduced
(see its help page): support may be removed entirely in future.
‘apropos()’ gains option ‘dot_internals’ which is used by the completion (‘help(rcompgen)’) engine to also see ‘base’ internals such as ‘.POSIXct()’.
Support in ‘tools::Rdiff’ for uncompressed PDF files is further reduced (see its help page): support may be removed entirely in future.
The ‘"lm"’ method for ‘summary()’ now gives the correct F-statistic when the model contains an offset. Reported in PR#18008.
‘tools::Rdiff(useDiff = TRUE)’ checks for the presence of an external ‘diff’ command and switches to ‘useDiff = FALSE’ if none is found.
This allows ‘R CMD Rdiff’ to always work.
‘R CMD check’ can optionally (but included in ‘--as-cran’) validate the HTML produced from the packages ‘.Rd’ files. See <URL: https://blog.r-project.org/2022/04/08/enhancements-to-html-documentation/>: this needs a fairly recent version of HTML Tidy to be available.
‘c(a=1, 2)[[]]’ no longer matches ‘2’ but rather signals a _classed_ error. Reported and analysed by David Vaughan in PR#18367, a duplicate of PR#18004, by Jan Meis et al. For consistency, ‘NULL[[]]’ is also erroneous now. ‘x[[]] <- v’ gives an error of the same class ‘"MissingSubscriptError"’.
‘tools::Rdiff(useDiff = TRUE)’ checks for the presence of an external
‘diff’ command and switches to ‘useDiff = FALSE’ if none is found.
‘tools::Rdiff(useDiff = TRUE)’ checks for the presence of an external ‘diff’ command and switches to ‘useDiff = FALSE’ if none is found.
‘sub’, ‘gsub’ and ‘strsplit’ now mark their non-ASCII results as
‘"bytes"’ when ‘useBytes = TRUE’ or any input is marked as ‘"bytes"’.
The performance of ‘grep’, ‘sub’, ‘gsub’ and ‘strsplit’ has been improved, particularly with ‘perl = TRUE’ and ‘fixed = TRUE’. Use of ‘useBytes = TRUE’ for performance reasons should no longer be needed and is discouraged. It may lead to incorrect results.
The performance of ‘grep’, ‘sub’, ‘gsub’ and ‘strsplit’ has been improved, particularly with ‘perl = TRUE’ and ‘fixed = TRUE’. Use of ‘useBytes = TRUE’ for performance reasons should no longer be needed and is discouraged. It may lead to incorrect results and newly also to runtime errors thanks to the previous item.
Use of ‘tools::Rdiff’ for uncompressed PDF files is no longer documented: support may be removed entirely in future.
‘tools::Rdiff(useDiff = TRUE)’ checks for the presence of an external ‘diff’ command and switches to ‘useDiff = FALSE’ if none is found.
‘sub’, ‘gsub’ and ‘strsplit’ now mark their non-ASCII results as ‘"bytes"’ when ‘useBytes = TRUE’ or any input is marked as ‘"bytes"’.
Performance of ‘grep’, ‘sub’, ‘gsub’ and ‘strsplit’ has been improved, particularly with ‘perl = TRUE’ and ‘fixed = TRUE’. Use of ‘useBytes = TRUE’ for performance reasons should no longer be needed and is discouraged. It may lead to incorrect results and newly also to runtime errors thanks to the previous change item.
‘c(a=1, 2)[[]]’ no longer matches ‘2’ but rather signals a _classed_ error. Reported and analysed by David Vaughan in PR#18367, a duplicate of PR#18004, by Jan Meis et al. For consistency, ‘NULL[[]]’ is also erronous now. ‘x[[]] <- v’ gives an error of the same class ‘"MissingSubscriptError"’.
When ‘isGeneric(f, fdef=*)’ is used with mismatching names, the warning is better understandable; reported (with fix) in PR#18370 by Gabe Becker.
The deprecated legacy typedefs of ‘Sint’ and ‘Sfloat’ in header ‘R.h’ can be excluded by defining macro ‘NO_S_TYPEDEFS’ before including the header. This is defined when using ‘R CMD check --as-cran’ or by defining the environment variable ‘_R_NO_S_TYPEDEFS_’ to a true value when running ‘R CMD check’.
If these are excluded, ‘R.h’ no longer includes header ‘limits.h’ from C nor ‘climits’ from C++.
[This is scheduled to become the default on 2022-08-10.]
The ‘relist()’ function of ‘utils’ now supports ‘NULL’ elements in the skeleton (PR#15854).
‘R CMD check’ now also reports problems when reading package news in md (file ‘NEWS.md’) and (optionally) plain text (file ‘NEWS’) formats.
‘tools::Rd2latex()’ now escapes hashes and ampersands when writing URLs, fixing LaTeX errors with such URLs in \tabular.
Regular expression functions now check more thoroughly whether their inputs are valid strings (in their encoding, e.g. in UTF-8).
The deprecated legacy typedefs of ‘Sint’ and ‘Sfloat’ in header ‘R.h’ can be excluded by defining macro ‘NO_S_TYPEDEFS’ before including the header. This is defined when using ‘R CMD check --as-cran’ or by defining the environment variable ‘_R_NO_S_TYPEDEFS_’ to a true value when running ‘R CMD check’.
If these are excluded, ‘R.h’ no longer includes header ‘limits.h’ (nor ‘climits’ from C++).
[This is scheduled to become the default on 2022-08-01.]
‘qt(*, log.p=TRUE)’ in outer tails no longer produces ‘NaN’ in its final steps, thus fixing PR#18360.
‘c(a=1, 2)[[]]’ no longer matches ‘2’ but rather signals a _classed_ error. Reported and analysed by David Vaughan in PR#18367, a duplicate of PR#18004, by Jan Meis et al. ‘x[[]] <- v’ gives an error of the same class ‘"MissingSubscriptError"’.
The PDF manuals (if built) can be compacted by the new target ‘make compact-pdf’ (at the top level or in directory ‘doc/manual’).
THe PDF manuals (if built) can be compacted by the new target ‘make compact-pdf’ (at the top level or in directory ‘doc/manual’).
Regular expression functions now check more thoroughly whether their inputs are valid strings (in their encoding, e.g. UTF-8).
‘summary.lm()’ now gives the correct F-statistic when the model contains an offset. Reported in PR#18008.
‘C()’ and ‘`contrasts<-`()’ now preserve factor level names when given a function object (as opposed a function name which did preserve names). Reported in PR#17616.
‘R CMD check’ can optionally (but included in ‘--as-cran’) validate the HTML produced from the packages ‘.Rd’ files. See <URL: https://blog.r-project.org/2022/04/08/enhancements-to-html-documentation/index.html>: this needs a fairly recent version of HTML Tidy to be available.
‘head(x, n)’ and ‘tail(x, n)’ now signal an error if ‘n’ is not numeric, instead of incidentally “working” sometimes returning all of ‘x’. Reported and discussed by Colin Fay, in PR#18357.
New function ‘utils::findCRANmirror()’ to find out if a CRAN mirror has been selected, otherwise fallback to the main site. This behaves in the same way as ‘tools::CRAN_package_db()’ and is intended for packages wishing to access CRAN for purposes other than installing packages.
The need for this was shown by a day when the main CRAN website was offline and a dozen or so packages which had its URL hardcoded failed their checks.
The libraries searched for by ‘--with-blas’ (without a value) now include BLIS (after OpenBLAS but before ATLAS). And on macOS, the Accelerate framework (after ATLAS). (This is patterned after the ‘AX_BLAS’ macro from the Autoconf Archive.)
The included LAPACK sources have been updated to 3.10.1.
The (full path to) the command ‘tidy’ to be used for HTML validation can be set by environment variable ‘R_TIDYCMD’.
Setting environment variable ‘_R_CHECK_RD_VALIDATE_RD2HTML_’ to a false value will override ‘R CMD check --as-cran’ and turn off HTML validation. This provides a way to circumvent a problematic ‘tidy’.
The 2006 version that ships with macOS is always skipped.
The undocumented legacy declarations of ‘Sint’, ‘Sfloat’, ‘SINT_MAX’ and ‘SINT_MIN’ in header ‘R.h’ are deprecated.
‘fisher.test(d)’ no longer segfaults for “large” ‘d’; fixing PR#18336 by preventing/detecting an integer overflow reliably.
‘tar(., files=*)’ now produces correctly the warning about invalid uid or gid of files, fixing PR#18344, reported by Martin Morgan.
‘tk_choose.files()’ with ‘multi = FALSE’ misbehaved on paths containing spaces (PR#18334) (regression introduced in R 4.0.0).
‘sort(x, partial = ind, *)’ now works correctly notably for the non-default ‘na.last = FALSE’ or ‘TRUE’, fixing PR#18335 reported by James Edwards.
Environment variable ‘_R_CHECK_XREFS_REPOSITORIES_’ is only used for checking ‘.Rd’ cross-references in ‘R CMD check’ (as documented) and not for other uses looking for a CRAN mirror.
The search for a CRAN mirror when checking packages now uses ‘getOption("repos")’ if that specifies a CRAN mirror, even when it does not also specify all three Bioconductor repositories (as was previously required).
The HTML code generated by ‘tools::Rd2HTML()’ has been improved to pass ‘tidy’ 5.8.0.
Writing to a clipboard connection works again, fixing a regression in R 4.2.0 (PR#18332). Re-using a closed clipboard connection longer issues a spurious warning about an ignored encoding argument.
C function ‘getlocale’ no longer attempts to query an unsupported category from the OS, even when requested at R level, which may cause crashes when R 4.2.0 (which uses UCRT) is embedded (reported by Kevin Ushey).
Accent keys now work in GraphApp Unicode windows, which are used by ‘Rgui’ whenever running in a multibyte locale (so also in UTF-8, hence fixing a regression in R 4.2.0 for users of systems where R 4.1 used a single-byte locale).
Completion in ‘Rgui’ now works also with non-ASCII characters.
‘Rgui’ no longer truncates usage information with ‘--help’.
Text injection from external applications via ‘SendInput’ now works in GraphApp Unicode windows, fixing a regression in R 4.2.0 for ‘Rgui’ users of systems where R 4.1 used a single-byte locale but R 4.2.0 uses UTF-8.
Performance of ‘txtProgressBar()’ in ‘Rgui’ when running in a multi-byte locale has been improved (fixing a performance regression in R 4.2.0 for users of systems where R 4.1 used a single-byte locale).
The script editor in ‘Rgui’ now works also on systems using UTF-8 as the native encoding. Users of the script editor have to convert their scripts with non-ASCII characters to UTF-8 before reading them in R 4.2.1 or newer (on recent Windows where UTF-8 is used). This fixes a regression in R 4.2.0, which prevented some operations with scripts when they contained non-ASCII characters.
‘xy.coords()’ and ‘xyz.coords()’ and consequently, e.g., ‘plot(x,y, log="y")’ now signal a _classed_ warning about negative values of y (where ‘log(.)’ is ‘NA’). Such a warning can be specifically suppressed or caught otherwise.
The HTML code generated by ‘tools::Rd2HTML()’ has been improved to pass ‘tidy’ 5.8.0.
The search for a CRAN mirror when checking packages now uses ‘getOption("repos")’ if that specifies a CRAN mirror, even when it does not also specify all three Bioconductor repositories (as was previously required).
Calling ‘&&’ or ‘||’ with LHS or (if evaluated) RHS of length greater than one is now always an error, with a report of the form
'length = 4' in coercion to 'logical(1)'
Environment variable ‘_R_CHECK_LENGTH_1_LOGIC2_’ no longer has any effect.
The parser now signals _classed_ errors, notably in case of the pipe operator ‘|>’. The error object and message now give line and column numbers, mostly as proposed and provided by Duncan Murdoch in PR#18328.
The flag ‘-fno-optimize-sibling-calls’ is no longer forced for ‘gfortran’ 7 and later. It should no longer be needed now using ‘hidden’ character-length arguments when calling BLAS/LAPACK routines from C/C++ is the default even for packages. (Unless perhaps packages call Fortran code from C/C++ without using R's headers and without allowing for these arguments.)
‘USE_FC_LEN_T’ is the default: this uses the correct (compiler-dependent) prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of many such calls - see ‘Writing R Extensions’ §6.6.1.
The deprecated legacy typedefs of ‘Sint’ and ‘Sfloat’ in header ‘R.h’ can be excluded by defining macro ‘NO_S_TYPEDEFS’ before including the header. This is defined when using ‘R CMD check --as-cran’ or by defining the environment variable ‘_R_NO_S_TYPEDEFS_’ to a true value when running ‘R CMD check’.
If these are excluded, ‘R.h’ no longer includes header ‘limits.h’ (nor ‘climits’ from C++).
[This is intended to become the default before release.]
‘R CMD check’ does more checking of package ‘.Rd’ files, warning about invalid email addresses and (some) invalid URIs and noting empty ‘\item’ labels in description lists.
New function ‘utils::findCRANmirror()’ to find out if a CRAN mirror has been selected, otherwise fallback to the main site. This behaves in the same way as ‘tools::CRAN_package_db()’ and is intended for packages wishing to access CRAN for purposes other than installing packages.
The need for this was shown by a day when the main CRAN website was offline and a dozen or so packages which had its URL hardcoded failed their checks.
Calling ‘&&’ or ‘||’ with either argument of length greater than one is
now an error. Environment variable ‘_R_CHECK_LENGTH_1_LOGIC2_’ can
still be set to get a verbose report (although that is likely to be
removed before release, and is no longer set by ‘R CMD check
--as-cran’).
The default error report is of the form
'length = 4' in coercion to 'logical(1)'
Calling ‘&&’ or ‘||’ with either argument of length greater than one is now always an error, with a report of the form
'length = 4' in coercion to 'logical(1)'
Environment variable ‘_R_CHECK_LENGTH_1_LOGIC2_’ no longer has any effect.
The parser now signals _classed_ errors, notably in case of the pipe operator, ‘|>’. The error object and message now give line and column numbers, mostly as proposed and provided by Duncan Murdoch in PR#18328.
A system installation of generic LAPACK 3.10.0 or later will be preferred to the version in the R sources.
‘configure’ option ‘--with-lapack=no’ (equivalently ‘--without-lapack’) forces compilation of the internal LAPACK sources.
If ‘--with-lapack’ is not specified, a system ‘liblapack’ is looked for and used if it reports version 3.10.0 or later and does not contain BLAS routines.
Packages using LAPACK will need to be reinstalled if this changes to using an external library.
The included LAPACK sources have been updated to include the four Fortran 90 routines rather than their Fortran 77 predecessors. This may give some different signs in SVDs or eigendecompositions.. (This completes the transition to LAPACK 3.10.x begun in R 4.2.0.)
The flag ‘-fno-optimize-sibling-calls’ is no longer forced for ‘gfortran’ 7 and later. It should no longer be needed now using ‘hidden’ character-length arguments is the default even for packages. (Unless perhaps packages call Fortran code from C/C++ without using R's headers and without allowing for these arguments.)
The deprecated legacy typedefs of ‘Sint’ and ‘Sfloat’ in header ‘R.h’ can be excluded by defining macro ‘NO_S_TYPEDEFS’ before including the header. This is defined when using ‘R CMD check --as-cran’ or by defining the environment variable ‘_R_NO_S_TYPEDEFS_’ to a true value when running ‘R CMD check’.
If these are excluded, ‘R.h’ no longer includes header ‘limits.h’ (nor ‘climits’ from C++).
Hashed ‘environment’s with sizes less than 5 can now grow. (Reported to R-devel by Duncan Garmonsway.)
The libraries searched for by ‘--with-blas’ (without a value) now include BLIS (after OpenBLAS but before ATLAS). And on macOS, the Accelerate framework (after ATLAS). (This is patterned after the ‘AX_BLAS’ macro from the Autoconf Archive.)
The search for a CRAN mirror when checking packages now uses ‘getOption("repos")’ if that specifies a CRAN mirror, even when it does not also specify all three Bioconductor repositiotries (as was previously required).
The search for a CRAN mirror when checking packages now uses ‘getOption("repos")’ if that specifies a CRAN mirror, even when it does not also specify all three Bioconductor repositiotries (as was previously reauired).
The deprecated legacy typedefs of ‘Sint’ and ‘Sfloat’ in header ‘R.h’ can be excluded by defining macro ‘NO_S_TYPEDEFS’ before including the header. This is defined when using ‘R CMD check --as-cran’ or by defining the environment variable ‘_R_NO_S_TYPEDEFS_’ to a true value when running ‘R CMD check’.
If these are excluded, ‘R.h’ no longer includes ‘limits.h’ nor ‘climits’.
‘toeplitz()’ is now generalized for asymmetric cases, with a ‘toeplitz2()’ variant.
The depreated legacy typedefs of ‘Sint’ and ‘Sfloat’ in header ‘R.h’ can be excluded by defining macro ‘NO_S_TYPEDEFS’ before including the header. This is defined when using ‘R CMD CHECK --as-cran’ or by defining the environment variable ‘_R_NO_S_TYPEDEFS_’ to a true value when running ‘R CMD CHECK’.
‘default.stringsAsFactors()’ is defunct.
The undocumented legacy declarations of ‘Sint’, ‘Sfloat’, ‘SINT_MAX’ and ‘SINT_MIN’ in header ‘R.h’ are deprecated.
Writing to a clipboard connection works again, fixing a regression in R 4.2.0 (PR#18332). Re-using a closed clipboard connection longer issues a spurious warning about an ignored encoding argument.
C function ‘getlocale’ no longer attempts to query an unsupported category from the OS, even when requested at R level, which may cause crashes when R 4.2.0 (which uses UCRT) is embedded (reported by Kevin Ushey).
Accent keys now work in GraphApp Unicode windows, which are used by ‘Rgui’ whenever running in a multibyte locale (so also in UTF-8, hence fixing a regression in R 4.2.0 for users of systems where R 4.1 used a single-byte locale).
Completion in ‘Rgui’ now works also with non-ASCII characters.
‘Rgui’ no longer truncates usage information with ‘--help’.
Text injection from external applications via ‘SendInput’ now works in GraphApp Unicode windows, fixing a regression in R 4.2.0 for ‘Rgui’ users of systems where R 4.1 used a single-byte locale but R 4.2.0 uses UTF-8.
Performance of ‘txtProgressBar()’ in ‘Rgui’ when running in a multi-byte locale has been improved (fixing a performance regression in R 4.2.0 for users of systems where R 4.1 used a single-byte locale).
The script editor in ‘Rgui’ now works also on systems using UTF-8 as the native encoding. Users of the script editor have to convert their scripts with non-ASCII characters to UTF-8 before reading them in R 4.2.1 or newer (on recent Windows where UTF-8 is used). This fixes a regression in R 4.2.0, which prevented some operations with scripts when they contained non-ASCII characters.
Writing to a clipboard connection on Windows works again, fixing a
regression in R 4.2.0 (PR#18332). Re-using a closed clipboard
connection on Windows no longer issues a spurious warning about an
ignored encoding argument.
‘getlocale’ on Windows no longer attempts to query an unsupported
category from the OS, even when requested at R level, which may cause
crashes when R 4.2.0 (which uses UCRT) is embedded (reported by Kevin
Ushey).
Accent keys now work in GraphApp Unicode windows, which are used by
Rgui whenever running in a multibyte locale (so also in UTF-8, hence
fixing a regression in R 4.2.0 for users of systems where R 4.1 used a
single-byte locale).
Completion in Rgui on Windows now works also with non-ASCII characters.
Rgui no longer truncates usage information with ‘--help’.
Text injection from external applications via ‘SendInput’ now works in
GraphApp Unicode windows, fixing a regression in R 4.2.0 for Rgui users
of systems where R 4.1 used a single-byte locale but R 4.2.0 uses
UTF-8.
Performance of ‘txtProgressBar’ in Rgui when running in a multi-byte
locale has been improved (fixing a performance regression in R 4.2.0
for users of systems where R 4.1 used a single-byte locale).
The script editor in Rgui now works also on systems using UTF-8 as the
native encoding. Users of the script editor have to convert their
scripts with non-ASCII characters to UTF-8 before reading them in R
4.2.1 or newer (on recent Windows where UTF-8 is used). This fixes a
regression in R 4.2.0, which prevented some operations with scripts
when they contained non-ASCII characters.
‘tar(., files=*)’ now produces correctly the warning about invalid uid or gid of files, fixing PR#18344, reported by Martin Morgan.
‘tk_choose.files()’ with ‘multi = FALSE’ misbehaved on paths containing spaces (PR#18334) (regression introduced in R 4.0.0).
‘sort(x, partial = ind, *)’ now works correctly notably for the non-default ‘na.last = FALSE’ or ‘TRUE’, fixing PR#18335 reported by James Edwards.
The script editor in Rgui now works also on systems using UTF-8 as the native encoding. Users of the script editor have to convert their scripts with non-ASCII characters to UTF-8 before reading them in R 4.2.1 or newer (on recent Windows where UTF-8 is used). This fixes a regression in R 4.2.0, which prevented some operations with scripts when they contained non-ASCII characters.
Text injection from external applications via ‘SendInput’ now works in GraphApp Unicode windows, fixing a regression in R 4.2.0 for Rgui users of systems where R 4.1 used a single-byte locale but R 4.2.0 uses UTF-8.
Environment variable ‘_R_CHECK_XREFS_REPOSITORIES_’ is only used for
checking ‘.Rd’ cross-references in ‘R CMD check’ (as documented) and
not for other uses looking for a CRAN mirror.
Environment variable ‘_R_CHECK_XREFS_REPOSITORIES_’ is only used for checking ‘.Rd’ cross-references in ‘R CMD check’ (as documented) and not for other uses looking for a CRAN mirror.
Environment variable ‘_R_CHECK_XREFS_REPOSITORIES_’ is only used for checking ‘.Rd’ cross-references in ‘R CMD check’ (as documented) and not for other uses looking for a CRAN mirror.
‘sort(x, partial = ind, *)’ no works correctly notably for the non-default ‘na.last = FALSE’ or ‘TRUE’, fixing PR#18335, reported by James Edwards.
Performance of ‘txtProgressBar’ in Rgui when running in a multi-byte locale has been improved (fixing a performance regression in R 4.2.0 for users of systems where R 4.1 used a single-byte locale).
The flag ‘-fno-optimize-sibling-calls’ is no longer forced for ‘gfortran’ 7 and later. It should no longer be needed now ‘USE_FC_LEN_T’ is the default. (Unless perhaps packages call Fortran code from C/C++ without using R's headers and without allowing for ‘hidden’ character-length arguments.)
Text injection from external applications via ‘SendInput’ now works in GraphApp Unicode windows, fixing a regression in R 4.2.0 for users of systems where R 4.1 used a single-byte locale but R 4.2.0 uses UTF-8.
The flag ‘-fno-optimize-sibling-calls’ is no longer forced for ‘gfortran’ 7 and later. It sbould no longer be needed now ‘USE_FC_LEN_T’ is the default. (Unless perhaps packages call Fortran code from C/C++ without using R's headers and without allowing for ‘hidden’ character-length arguments.)
‘toeplitz()’ is now generalized for asymmetric cases, also with ‘toeplitz2()’ variant.
‘library()’ now passes its ‘lib.loc’ argument when requiring ‘Depends’ packages; reported (with fix) in PR#18331 by Mikael Jagan.
‘library()’ now passes its ‘lib.loc’ argument when requiring ‘Depends’
packages; reported (with fix) in PR#18331 by Mikael Jagan.
The (full path to) the command ‘tidy’ to be used for HTML validation can be set by environment variable ‘R_TIDYCMD’.
‘tar(., files=*)’ now produces the warning about invalid uid or gid of files correctly, fixing PR#18344, reported by Martin Morgan.
‘tk_choose.files()’ with ‘multi=FALSE’ misbehaved on paths containing spaces (PR#18334) (regression introduced in R 4.0.0).
Rgui no longer truncates usage information with ‘--help’.
‘R CMD Stangle’: improved message about ‘Output’ files.
‘USE_FC_LEN_T’ will become the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’ §6.6.1. (This has been supported since R 3.6.2.)
The included BLAS sources have been updated to those shipped with LAPACK version 3.10.1. This causes some (platform-dependent) changes to package check output.
‘USE_FC_LEN_T’ is the default: this uses the correct (compiler-dependent) prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’ §6.6.1.
‘USE_FC_LEN_T’ is the default: this uses the correct prototypes for
Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment
of most such calls - see ‘Writing R Extensions’ §6.6.1.
[In progress: scheduled for May 7.
Setting environment variable ‘_R_INSTALL_USE_FC_LEN_T_’ to a true value enables this _pro tem_. This is set by ‘R CMD check --as-cran’ when it installs a package.]
‘USE_FC_LEN_T’ is the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’ §6.6.1.
‘default.stringsAsFactors()’ is defunct,
‘fisher.test(d)’ no longer segfaults for “large” ‘d’; fixing PR#18336 by preventing/detecting an integer overflow reliably.
The parser now signals _classed_ errors, notably in case of the pipe op, ‘|>’. The error object and message now give line and column numbers, mostly as proposed and provided by Duncan Murdoch in PR#18328.
Accent keys now work in GraphApp Unicode windows, which are used by Rgui whenever running in a multibyte locale (so also in UTF-8, hence fixing a regression in R 4.2.0 for users of systems where R 4.1 used a single-byte locale).
Completion in Rgui on Windows now works also with non-ASCII characters.
Setting environment variable ‘_R_CHECK_RD_VALIDATE_RD2HTML_’ to a false value will override ‘R CMD check --as-cran’ and turn off HTML validation. This provides a way to circumvent a problematic ‘tidy’.
The 2006 version that ships with macOS is always skipped.
‘USE_FC_LEN_T’ is the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’ §6.6.1.
[In progress: scheduled for May 7.
Setting environment variable ‘_R_INSTALL_USE_FC_LEN_T_’ to a true value enables this _pro tem_. This is set by ‘R CMD check --as-cran’ when it installs a package.]
Setting environment variable ‘_R_CHECK_RD_VALIDATE_RD2HTML_’ to a false value will override ‘R CMD check --as-cran’ and turn off HTML validation. This provides a way to circumvent a problematic ‘tidy’ such as the 2006 version that ships with macOS.
‘library()’ now passes its ‘lib.loc’ argument when requiring ‘Depends’ packages; reported (with fix) in PR#18331 by Mikael Jagan.
Calling ‘&&’ or ‘||’ with either argument of length greater than one is now an error. Environment variable ‘_R_CHECK_LENGTH_1_LOGIC2_’ can still be set to get a verbose report (although that is likely to be removed before release, and is no longer set by ‘R CMD check --as-cran’).
The default error report is of the form
'length = 4' in coercion to 'logical(1)'
‘as.character(<Rd>, deparse = TRUE)’ failed to re-escape curly braces in LaTeX-like text. (Reported by Hadley Wickham in PR#18324.)
Writing to a clipboard connection on Windows works again, fixing a regression in R 4.2.0 (PR#18332). Re-using a closed clipboard connection on Windows no longer issues a spurious warning about an ignored encoding argument.
‘getlocale’ on Windows no longer attempts to query an unsupported category from the OS, even when requested at R level, which may cause crashes when R 4.2.0 (which uses UCRT) is embedded (reported by Kevin Ushey).
Setting environment variable ‘_R_CHECK_RD_VALIDATE_RD2HTML_’ to false value will override ‘R CMD check --as-cran’ and turn off HTML validation. This provides a way to circumvent a problematic ‘tidy’ such as the 2006 version that ships with macOS.
Calling ‘&&’ or ‘||’ with either argument of length greater than one is now an error. Environment variable ‘_R_CHECK_LENGTH_1_LOGIC2_’ can still be set to get a verbose report (although that is likely to be removed before release).
The default error report is of the form
'length = 4' in coercion to 'logical(1)'
The included BLAS sources have been updated to those shipped with LAPACK version 3.10.1. This makes some (platform-dependent) changes to package check output.
The included LAPACK sources have been updated to include the four Fortran 90 routines rather than their Fortran 77 predecessors. This too may give some different signs.
Setting environment variable ‘_R_CHECK_RD_VALIDATE_RD2HTML_’ to false value will override ‘R CMD check --as-cran’ and turn off HTML validation. This provides a way to circumvent a problematic ‘tidy’ such as the 2006 version that ships with macOS.
‘R CMD check’ can optionally (but included in ‘--as-cran’) validate the HTML produced from the packages ‘.Rd’ files. See <URL: https://blog.r-project.org/2022/04/08/enhancements-to-html-documentation/index.html> : this needs a fairly recent version of HTML tidy to be available.
The included BLAS sources have been updated to those shipped with LAPACK version 3.10.1.
Calling ‘&&’ or ‘||’ with either argument of length greater than one is now an error. [Scheduled for not later than May 2.]
‘default.stringsAsFactors()’ is defunct,
[Scheduled for May 7.]
The included BLAS sources have been updated to those shipped with LAPACK version 3.10.1,
The deprecated S-compatibility macros ‘DOUBLE_*’ in ‘R_ext/Constants.h’ (included by ‘R.h’) have been removed.
‘list2DF()’ now checks that its arguments are of the same length, rather than use recycling.
A system installation of generic LAPACK 3.10.0 or later will be preferred to the version in the R sources.
‘configure’ option ‘--with-lapack=no’ (equivalently ‘--without-lapack’) forces compilation of the internal LAPACK sources.
If ‘--with-lapack’ is not specified, a system ‘liblapack’ is looked for and used if it reports version 3.10.0 or later and does not contain BLAS routines.
Using 3.10.x may give some different signs from earlier versions in SVDs or eigendecompositions.
Packages using LAPACK will need to be reinstalled if this changes to using an external library.
The set utility functions, notably ‘intersect()’ have been tweaked to be more consistent and symmetric in their two set arguments, also preserving a common ‘mode’.
The libraries searched for by ‘--with-blas’ (without a value) now include BLIS (after OpenBLAS but before ATLAS). And on macOS, the Accelerate framework (after ATLAS).
The included LAPACK sources have been updated to 3.10.1.
Placeholder.
The included BLAS sources have been updated to those included in LAPACK version 3.10.1,
The possible libraries searched for by ‘--with-blas’ now includes BLIS.
The included LAPACK sources have been updated to include the four Fortran 90 routines rather than their Fortran 77 predecessors. This may give some different signs in SVDs.
A system installation of generic LAPACK 3.10.0 or later will be preferred to the version in the R sources.
‘configure’ option ‘--with-lapack=no’ (equivalently ‘--without-lapack’) forces compilation of the internal LAPACK sources.
If ‘--with-lapack’ is not specified, a system ‘liblapack’ is looked for and used if it reports version 3.10.0 or later and does not contain BLAS routines.
Using 3.10.x may give some different signs in SVDs.
Packages using LAPACK will need to be reinstalled if this changes to using an external library.
‘R CMD check’ does more checking of package Rd files, warning about invalid email addresses and (some) invalid URIs and noting empty ‘\item’ labels in description lists.
The possible libraries searched for by ‘--with-blas’ now includes BLIS.
Hashed ‘environment’s with sizes less than 5 now can grow, too. (Reported to R-devel by Duncan Garmonsway.)
A system installation of generic LAPACK 3.10.0 or later will be preferred to the version in the R sources.
‘configure’ option ‘--with-lapack=no’ (equivalently ‘--without-lapack’) forces compilation of the internal LAPACK sources.
If ‘--with-lapack’ is not specified, a system ‘liblapack’ is looked for and used if it reports version 3.10.0 or later and does not contain BLAS routines.
Using 3.10.0 may give some different signs in SVDs (seen in the ‘lapack.R’ test).
Packages using LAPACK will need to be reinstalled if this changes to using an external library.
The set utility functions, notably ‘intersect()’ have been tweaked to be more consistent and symmetric in their two set arguments, also preserving a common ‘mode’, see ‘?sets’.
‘USE_FC_LEN_T’ is the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’ §6.6.1.
[In progress: scheduled for May 5 if enough packages are corrected before then.
Setting environment variable ‘_R_INSTALL_USE_FC_LEN_T_’ to a true value enables this _pro tem_. This is set by ‘R CMD check --as-cran’ when it installs a package.]
‘tools::Rd2txt()’ used for plain-text help pages now renders \hrefs (if ‘tools::Rd2txt_options(showURLs = TRUE)’) and \urls with percent-encoding and standards-compliant delimiting style (angle brackets and no ‘URL: ’ prefix). \email is now rendered with a ‘mailto:’ prefix.
A system installation of LAPACK 3.10.0 or later will be preferred to the version in the R sources.
‘configure’ option ‘--with-lapack=no’ (equivalently ‘--without-lapack’) forces compilation of the internal LAPACK sources.
If ‘--with-lapack’ is not specified, a system ‘liblapack’ is looked for and used if it reports version 3.10.0 or later.
Using 3.10.0 may give some different signs in SVDs (seen in the ‘lapack.R’ test).
Packages using LAPACK will need to be reinstalled if this changes to using an external library.
‘USE_FC_LEN_T’ is the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’ §6.6.1.
[In progress: scheduled for May 5 if enough packages are corrrected before then.
Setting environment variable ‘_R_INSTALL_USE_FC_LEN_T_’ to a true value enables this _pro tem_. This is set by ‘R CMD check --as-cran’ when it installs a package.]
Calling ‘&&’ or ‘||’ with either argument of length greater than one is now an error. [Scheduled for May 2.]
A system installation of LAPACK 3.10.0 or later will be preferred to the version in the R sources.
‘configure’ option ‘--with-lapack=no’ (equivalently ‘--without-lapack’) forces compilation of the internal LAPACK sources.
If ‘--with-lapack’ is not specified, a system ‘liblapack’ is looked for and used if it reports version 3.10.0 or later.
Using 3.10.0 may give some different signs in SVDs (seen in the ‘lapack.R’ test).
Packages using LAPACK will need to be reinstalled if this changes to using an external library.
[In progress. Not supported for static liblapack.a.]
Calling ‘&&’ or ‘||’ with either argument of length greater than one is now an error. [Postponed until most of ca 160 packages have been updated.]
A system installation of LAPACK 3.10.0 or later will be preferred to the version in the R sources.
‘configure’ option ‘--with-lapack=no’ (equivalently ‘--without-lapack’) forces compilation of the internal LAPACK sources.
If ‘--with-lapack’ is not specified, a system ‘liblapack’ is looked for and used if it reports version 3.10.0 or later.
Using 3.10.0 gives some different signs in SVDs, seen in the ‘lapack.R’ test.
Packages using LAPACK will need to be reinstalled if this changes to using an external library.
[In progress. Not supported for static liblapack.a.]
‘USE_FC_LEN_T’ is the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’ §6.6.1.
[In progress: setting environment variable ‘_R_INSTALL_USE_FC_LEN_T_’ to a true value enables this _pro tem_. This is set by ‘R CMD check --as-cran’ when it installs a package.]
‘USE_FC_LEN_T’ will become the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’ §6.6.2. (This has been supported since R 3.6.2.)
‘USE_FC_LEN_T’ is the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’ §6.6.1.
[In progress: setting environment variable ‘_R_INSTALL_USE_FC_LEN_T_’ to a true value enables this _pro tem_.]
New functions ‘psmirnov()’, ‘qsmirnov()’ and ‘rsmirnov()’ in package ‘stats’ implementing the asymptotic and exact distributions of the two-sample Smirnov statistic.
‘USE_FC_LEN_T’ is the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’. [In progress.]
R can now be built with ‘DEFS = -DSTRICT_R_HEADERS’ .
For packages using the \doi Rd macro (now an install-time \Sexpr) but no other dynamic Rd content, ‘R CMD build’ now produces a smaller tarball and is considerably faster - skipping temporary package installation.
Calling ‘&&’ or ‘||’ with either argument of length greater than one is now an error. [Postponed until ca 200 packages have been updated.]
A system installation of LAPACK 3.10.0 or later will be preferred to the version in the R sources. [In progress.]
‘USE_FC_LEN_T’ is the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’. [Scheduled for Apr 27.]
Improved determination of the correct translation domain in non-base packages, addressing the combination of PR#18092 and PR#17998 (‘#c6’) with reports and _augmented_ patch #2904 by Suharto Anggono.
Note that ‘"R-base"’ is no longer the default domain e.g., for top-level calls to ‘gettext()’; rather translation needs explicit ‘domain = *’ specification in such cases.
The ‘formula’ method of ‘aggregate()’ now matches the generic in naming its first argument ‘x’ (resolving PR#18299 by Thomas Soeiro).
This means that calling ‘aggregate()’ with a formula as a named first argument requires name ‘formula’ in earlier versions of R and name ‘x’ now, so portable code should not name the argument (code in many packages did).
Calling ‘&&’ or ‘||’ with either argument of length greater than one now gives a warning (which it is intended will become an error).
Calling ‘if()’ or ‘while()’ with a condition of length greater than one gives an error rather than a warning. Consequently, environment variable ‘_R_CHECK_LENGTH_1_CONDITION_’ no longer has any effect.
Windows users should consult the WINDOWS section below for some profound changes including
• Support for 32-bit builds has been dropped.
• UTF-8 locales are used where available.
• The default locations for the R installation and personal library folder have been changed.
Thanks to Tomas Kalibera for months of work on the Windows port for this release.
‘matrix(x, n, m)’ now warns in more cases where ‘length(x)’ differs from ‘n * m’, as suggested by Abby Spurdle and Wolfgang Huber in Feb 2021 on the R-devel mailing list.
This warning can be turned into an error by setting environment variable ‘_R_CHECK_MATRIX_DATA_’ to ‘TRUE’: ‘R CMD check --as-cran’ does so unless it is already set.
Function ‘file_test()’ in package ‘utils’ gains tests for symlinks, readability and writability.
‘capabilities("libxml")’ is now false.
The description of ‘capabilities("http/ftp")’ now reflects that it refers to the default method, no longer the internal one.
‘simplify2array()’ gains an ‘except’ argument for controlling the exceptions used by ‘sapply()’.
Environment variables ‘R_LIBS_USER’ and ‘R_LIBS_SITE’ are both now set to the R system default if unset or empty, and can be set to ‘NULL’ to indicate an empty list of user or site library directories.
The warning for ‘axis()’(-like) calls in cases of relatively small ranges (typically in log-scale situations) is slightly improved _and_ suppressed from explicit calls to ‘.axisPars()’ as has always been the intention.
The ‘contrasts’ setter function ‘`contrasts<-`’ gains an explicit default ‘how.many = NULL’ rather than just using ‘missing(how.many)’.
‘grid.pretty()’ gains a new optional argument ‘n = 5’.
There is a new function ‘.pretty()’ with option ‘bounds’ as a technical-utility version of ‘pretty()’. It and ‘pretty()’ gain a new argument ‘f.min’ with a better than back-compatible default.
Function ‘grDevices::axisTicks()’ and related functions such as ‘graphics::axis()’ work better, notably for the log scale; partly because of the ‘pretty()’ improvements, but also because care is taken e.g., when ‘ylim’ is finite but ‘diff(ylim)’ is infinite.
‘nclass.FD()’ gains a ‘digits’ option.
The R Mathlib internal C function ‘bd0()’ (called indirectly from a dozen probability density and distribution functions such as ‘dpois()’, ‘dbinom()’, ‘dgamma()’, ‘pgamma()’ _etc_) has been complemented by a more sophisticated and (mostly) more accurate C function ‘ebd0()’, currently called only by internal ‘dpois_raw()’ improving accuracy for R level ‘dpois()’ and potentially others calling it such as ‘dnbinom()’, ‘dgamma()’ or ‘pgamma()’. (Thanks to Morten Welinder's PR#15628.)
‘write.ftable()’ gains ‘sep = " "’ argument as suggested by Thomas Soeiro.
The names of the locale categories supported by R's ‘Sys.getlocale()’ and ‘Sys.setlocale()’ are now provided by variable ‘.LC.categories’ in the ‘base’ namespace.
The ‘Date’ and ‘POSIXt’ methods for ‘hist()’ and the ‘histogram’ method for ‘plot()’ now also use the new default ‘col = "lightgray"’ in consistency with the corresponding change to ‘hist()’'s default for R 4.0.0.
‘hist.default()’ gains new ‘fuzz’ argument, and the histogram ‘plot’ method no longer uses fractional axis ticks when displaying counts (‘"Frequency"’).
‘mapply()’ and hence ‘Map()’ now also obey the “max-or-0-if-any” recycling rule, such that, e.g., ‘Map(`+`, 1:3, 1[0])’ is valid now.
‘as.character(<obj>)’ for ‘"hexmode"’ or ‘"octmode"’ objects now fulfils the important basic rule ‘as.character(x)[j] === as.character(x[j])’.
‘substr(ch, start,end) <- new’ now e.g., preserves ‘names(ch)’; ditto for ‘substring()’, thanks to a patch from Brodie Gaslam.
‘plot(<lm>)’ gains a ‘extend.ylim.f’ argument, in partial response to PR#15285; further PR#17784 is fixed thanks to several contributors and a patch by Elin Waring. The Cook's dist contours get customizable via ‘cook.col’ and ‘cook.lty’ with a different default color and their legend is nicer by default and customizable via ‘cook.legendChanges’.
Attempting to subset an object that is not subsettable now signals an error of class ‘notSubsettableError’. The non-subsettable object is contained in the ‘object’ field of the error condition.
Subscript-out-of-bounds errors are now signaled as errors of class ‘subscriptOutOfBoundsError’.
Stack-overflow errors are now signaled as errors inheriting from class ‘stackOverflowError’. See ‘?stackOverflowError’ for more details.
New partly experimental ‘Sys.setLanguage()’ utility, solving the main problem of PR#18055.
‘gettext()’ and ‘gettextf()’ get a new option ‘trim = TRUE’ which when set to false allows translations for strings such as ‘"Execution halted\n"’ typical for C code.
An experimental implementation of hash tables is now available. See ‘?hashtab’ for more details.
‘identical()’ gains a ‘extptr.as.ref’ argument for requesting that external pointer objects be compared as reference objects.
‘reorder()’ gets an argument ‘decreasing’ which it passes to ‘sort()’ for level creation; based on the wish and patch by Thomas Soeiro in PR#18243.
‘as.vector()’ gains a ‘data.frame’ method which returns a simple named list, also clearing a long standing ‘FIXME’ to enable ‘as.vector(<data.frame>, mode="list")’. This breaks code relying on ‘as.vector(<data.frame>)’ to return the unchanged data frame.
‘legend()’ is now vectorized for arguments ‘cex’, ‘x.intersp’, and ‘text.width’. The latter can now also be specified as a vector (one element for each column of the legend) or as ‘NA’ for computing a proper column wise maximum value of ‘strwidth(legend)’. The argument ‘y.intersp’ can be specified as a vector with one entry for each row of the legend.
‘legend()’ also gains new arguments ‘title.cex’ and ‘title.font’. Thanks to Swetlana Herbrandt.
Deparsing no longer remaps attribute names ‘dim’, ‘dimnames’, ‘levels’, ‘names’ and ‘tsp’ to historical S-compatible names (which ‘structure()’ maps back).
‘sample()’ and ‘sample.int()’ have additional sanity checks on their ‘size’ and ‘n’ arguments.
‘all.equal.numeric()’ gains a sanity check on its ‘tolerance’ argument - calling ‘all.equal(a, b, c)’ for three numeric vectors is a surprisingly common error.
‘mean(na.rm =)’, ‘rank(na.last =)’, ‘barplot(legend.text =)’, ‘boxplot()’, ‘contour(drawlabels =)’, ‘polygon(border =)’ and ‘methods::is(class2 =)’ have more robust sanity checks on their arguments.
‘R CMD Rd2pdf’ (used by ‘R CMD check’) has a more robust sanity check on the format of ‘\alias{}’ commands.
‘psigamma(x, deriv)’ for negative ‘x’ now also works for ‘deriv = 4’ and ‘5’; their underlying C level ‘dpsifn()’ is documented in ‘Writing R Extensions’.
The HTML help system now uses HTML5 (wish of PR#18149).
‘ks.test()’ now provides exact p-values also with ties and MC p-values in the two-sample (Smirnov) case. By Torsten Hothorn.
‘ks.test()’ gains a formula interface, with ‘y ~ 1’ for the one-sample (Kolmogorov) test and ‘y ~ group’ for the two-sample (Smirnov) test. Contributed by Torsten Hothorn.
The return value from ‘ks.test()’ now has class ‘c("ks.test", "htest")’ - packages using ‘try()’ need to take care to use ‘inherits()’ and not ‘==’ on the class.
‘iconv()’ now allows ‘sub = "c99"’ to use C99-style escapes for UTF-8 inputs which cannot be converted to encoding ‘to’.
In a forward pipe ‘|>’ expression it is now possible to use a named argument with the placeholder ‘_’ in the ‘rhs’ call to specify where the ‘lhs’ is to be inserted. The placeholder can only appear once on the ‘rhs’.
The included LAPACK sources have been updated to version 3.10.0, except for the four Fortran 77 routines which 3.10.0 has re-implemented in Fortran 90 (where the older versions have been retained as the R build process does not support Fortran 90).
‘path.expand()’ and most other uses of tilde expansion now warn if a path would be too long if expanded. (An exception is ‘file.exists()’, which silently returns false.)
‘trunc(<Date>, *)’ now supports ‘units = "months"’ or ‘"years"’ for consistency with the ‘POSIXt’ method, thanks to Dirk Eddelbuettel's proposal in PR#18099.
The HTML help system has several new features: LaTeX-like math can be typeset using either KaTeX or MathJax, usage and example code is highlighted using Prism, and for dynamic help the output of examples and demos can be shown within the browser if the ‘knitr’ package is installed. These features can be disabled by setting the environment variable ‘_R_HELP_ENABLE_ENHANCED_HTML_’ to a false value.
The graphics engine version, ‘R_GE_version’, has been bumped to ‘15’ and so packages that provide graphics devices should be reinstalled.
The ‘grid’ package now allows the user to specify a “vector” of pattern fills. The ‘fill’ argument to ‘gpar()’ accepts a list of gradients and/or patterns and the functions ‘linearGradient()’, ‘radialGradient()’, and ‘pattern()’ have a new ‘group’ argument.
Points grobs (data symbols) can now also have a pattern fill.
The ‘grobCoords()’ function now returns a more informative and complex result.
The ‘grid’ package has new functions for drawing isolated groups: ‘grid.group()’, ‘grid.define()’, and ‘grid.use()’. These functions add compositing operators and affine transformations to R's graphics capabilities.
The ‘grid’ package also has new functions for stroking and filling paths: ‘grid.stroke()’, ‘grid.fill()’, and ‘grid.fillStroke()’.
A new function ‘as.path()’ allows the user to specify the fill rule for a path that is to be used for clipping, stroking, or filling; available options are ‘"winding"’ and ‘"evenodd"’. A new function ‘as.mask()’ allows the user to specify the type of a mask; available options are ‘"alpha"’ and ‘"luminance"’.
These new features are only supported so far (at most) on the Cairo-based graphics devices and on the ‘pdf()’ device.
‘dev.capabilities()’ reports on device support for the new features.
‘par()’ now warns about unnamed non-character arguments to prevent misuse such as ‘{usr <- par("usr"); par(usr)}’.
R uses UTF-8 as the native encoding on recent Windows systems (at least Windows 10 version 1903, Windows Server 2022 or Windows Server 1903). As a part of this change, R uses UCRT as the C runtime. UCRT should be installed manually on systems older than Windows 10 or Windows Server 2016 before installing R.
The default personal library on Windows, folder ‘R\win-library\x.y’ where ‘x.y’ stands for R release ‘x.y.z’, is now a subdirectory of Local Application Data directory (usually a hidden directory ‘C:\Users\username\AppData\Local’). Use ‘shell.exec(.libPaths()[1])’ from R to open the personal library in Explorer when it is first in the list (PR#17842).
R uses a new 64-bit Tcl/Tk bundle. The previous 32-bit/64-bit bundle had a different layout and can no longer be used.
Make files and installer scripts for Windows have been tailored to ‘Rtools42’, the newly recommended 64-bit ‘gcc’ 10.3 MinGW-W64 UCRT toolchain.
‘Rtools42’ by default uses the Windows security features ASLR and DEP; hence CRAN builds of R and packages also do.
R now supports files ‘Makevars.ucrt’, ‘Makefile.ucrt’, ‘configure.ucrt’ and ‘cleanup.ucrt’ in packages, which are used in preference to the ‘.win’ variants. This allows keeping the ‘.win’ files around to support older versions of R. This feature will be removed in the future once support for older versions of R would no longer be needed.
‘R.version’ gains a new field ‘crt’ (only on Windows) to denote the C runtime. The value is ‘"ucrt"’.
On Windows, ‘download.file(method = "auto")’ and ‘url(method = "default")’ now follow Unix in using ‘"libcurl"’ for all except ‘file://’ URIs.
‘Rtools42’ includes an unpatched Msys2 build of GNU ‘tar’. Paths including drive letters can be made to work by adding ‘--force-local’ to environment variable ‘TAR_OPTIONS’. (‘Rtools40’ and earlier included a patched version which defaulted to this option.)
Installer builds of R automatically find the ‘Rtools42’ software collection as well as the compiler toolchain. No ‘PATH’ setting is required from the user.
The default installation directory of R for a user-only installation has been changed to the User Program Files directory (usually a hidden directory ‘C:\Users\username\AppData\Local\Programs’) to follow Windows conventions. Use ‘shell.exec(R.home())’ from R to open the R installation directory in Explorer (PR#17842).
R now supports installation-time patching of packages. Patches may be installed from a supplied URL or a local directory or disabled. Patches are included into the installed packages for reference. This experimental feature may be removed in the future.
‘libcurl’ is now required for building from source.
The clipboard connection now works also with text in other than the current native encoding (PR#18267, with Hiroaki Yutani). Text is always pasted to the clipboard in UTF16-LE and the ‘encoding’ argument is ignored.
The internal case-changing functions are now used by default on Windows - this circumvents problems (for example with E acute) of the UCRT Windows' runtime.
R on Windows now uses the system memory allocator. Doug Lea's allocator was used since R 1.2.0 to mitigate performance limitations seen with system allocators on earlier versions of Windows.
‘memory.limit()’ and ‘memory.size()’ are now stubs on Windows (as on Unix-alikes).
Applications embedding R on Windows can now use additional callbacks, which have so far only been available only on Unix (PR#18286).
Facilities for accessing ‘ftp://’ sites are no longer tested (except _pro tem_ for ‘curlGetHeaders()’) as modern browsers have removed support.
R can now be built with ‘DEFS = -DSTRICT_R_HEADERS’, but not yet some of the recommended packages.
‘R CMD INSTALL’ no longer tangles vignettes. This completes an ‘R CMD build’ change in R 3.0.0 and affects packages built before R 3.0.2. Such packages should be re-made with ‘R CMD build’ to have the tangled R code of vignettes shipped with the tarball.
‘USE_FC_LEN_T’ will become the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’.
Package installation speed for packages installed with ‘keep.source’ has been improved. This resolve the issue reported by Ofek Shilon in PR#18236.
‘R CMD check’ can optionally report files/directories left behind in home, ‘/tmp’ (even though ‘TMPDIR’ is set) and other directories. See the “R Internals” manual for details.
‘R CMD check’ now reports byte-compilation errors during installation. These are not usually fatal but may result in parts of the package not being byte-compiled.
‘_R_CHECK_DEPENDS_ONLY_’ can be applied selectively to examples, tests and/or vignettes in ‘R CMD check’: see the “R Internals” manual.
‘_R_CHECK_SRC_MINUS_W_IMPLICIT_’ now defaults to true: recent versions of Apple ‘clang’ on macOS have made implicit function declarations in C into a compilation error.
‘R CMD check --as-cran’ makes use of the environment variable ‘AUTORECONF’. See the “R Internals” manual §8 for further details.
‘R CMD check --use-valgrind’ also uses ‘valgrind’ when re-building vignettes as some non-Sweave vignettes unhelpfully comment out all their code when ‘R CMD check’ runs vignettes.
Errors in re-building vignettes (unless there are LaTeX errors) are reported by ‘R CMD check’ as ‘ERROR’ rather than ‘WARNING’ when running vignettes has been skipped (as it frequently is in CRAN checks and by ‘--as-cran’).
‘R CMD Rd2pdf’ gains a ‘--quiet’ option that is used by ‘R CMD build’ when building the PDF package manual.
‘R CMD Rd2pdf’ now always runs LaTeX in batch mode, consistent with Texinfo >= 6.7. The ‘--batch’ option is ignored.
‘R CMD build’ and ‘R CMD check’ now include the Rd file name and line numbers in the error message of an \Sexpr evaluation failure.
The non-API header ‘R_ext/R-ftp-http.h’ is no longer provided, as the entry points it covered are now all defunct.
A number of non-API declarations and macro definitions have been moved from the installed header ‘Rinternals.h’ to the internal header ‘Defn.h’. Packages that only use entry points and definitions documented to be part of the API as specified in ‘Writing R Extensions’ §6 should not be affected.
The macro ‘USE_RINTERNALS’ no longer has any effect when compiling package code. Packages which also use ‘R_NO_REMAP’ will need to ensure that the remapped names are used for calls to API functions that were formerly also made available as macros.
The deprecated legacy S-compatibility macros ‘PROBLEM’, ‘MESSAGE’, ‘ERROR’, ‘WARN’, ‘WARNING’, ‘RECOVER’, ... are no longer defined in ‘R_exts/RS.h’ (included by ‘R.h’). Replace these by calls to ‘Rf_error’ and ‘Rf_warning’ (defined in header ‘R_ext/Error.h’ included by ‘R.h’).
Header ‘R_ext/RS.h’ no longer includes ‘R_ext/Error.h’.
Header ‘R_ext/Constants.h’ (included by ‘R.h’) when included from C++ now includes the C++ header ‘cfloat’ rather than the C header ‘float.h’ (now possible as C++11 is required).
The legacy S-compatibility macros ‘DOUBLE_*’ in ‘R_ext/Constants.h’ (included by ‘R.h’) are deprecated.
The deprecated S-compatibility macros ‘SINGLE_*’ in ‘R_ext/Constants.h’ (included by ‘R.h’) have been removed.
‘R_Calloc’, ‘R_Free’ and ‘R_Realloc’ are preferred to their unprefixed forms and error messages now use the prefix. These forms were introduced in R 3.4.0 and are available even when ‘STRICT_R_HEADERS’ is defined.
‘rmultinom’ has been documented in ‘Writing R Extensions’ §6 so is now part of the R API.
Similarly, ‘Rtanpi’, called from R level ‘tanpi()’ is now part of the R API.
The long-deprecated, undocumented and non-API entry point ‘call_R’ is no longer declared in ‘R_ext/RS.h’ (included by ‘R.h’).
The header ‘S.h’ which has been unsupported since Jan 2016 has been removed. Use ‘R.h’ instead.
The (non-default and deprecated) ‘method = "internal"’ for ‘download.file()’ and ‘url()’ no longer supports ‘http://’ nor ‘ftp://’ URIs. (It is used only for ‘file://’ URIs.)
On Windows, ‘download.file(method = "wininet")’ no longer supports ‘ftp://’ URIs. (It is no longer the default method, which is ‘"libcurl"’ and does.)
On Windows, the deprecated ‘method = "wininet"’ now gives a warning for ‘http://’ and ‘https://’ URIs for both ‘download.file()’ and ‘url()’. (It is no longer the default method.)
On Windows, the command-line option ‘--max-mem-size’ and environment variable ‘R_MAX_MEM_SIZE’ are defunct. The memory allocation limit was important for 32-bit builds, but these are no longer supported.
‘default.stringsAsFactors()’ is now formally deprecated, where that was only mentioned on its regular help page, previously. So it now gives a warning if called.
‘unix.time()’ is defunct now; it had been deprecated since R 3.4.0.
Setting ‘digits = 0’ in ‘format()’, ‘print.default()’ (and hence typically ‘print()’) or ‘options()’ is again invalid. Its behaviour was platform-dependent, and it is unclear what “zero significant digits” should mean (PR#18098).
Messages from C code in the ‘cairo’ section of package ‘grDevices’ are now also offered for translation, thanks to Michael Chirico's PR#18123.
‘mean(x)’ with finite ‘x’ now is finite also without "long.double" capability.
‘R CMD Rd2pdf’ no longer leaves an empty build directory behind when it aborts due to an already existing output file. (Thanks to Sebastian Meyer's PR#18141.)
‘density(x, weights = w, na.rm = TRUE)’ when ‘anyNA(x)’ is true, now removes weights “in parallel” to ‘x’, fixing PR#18151, reported by Matthias Gondan. Additionally, it gets a ‘subdensity’ option.
Conversion of \Sexpr[]{<expR>} to LaTeX or HTML no longer produces long blocks of empty lines when ‘<expR>’ itself contains several lines all producing empty output. Thanks to a report and patch by Ivan Krylov posted to R-devel.
‘R CMD build’ no longer fails if a package vignette uses child documents and ‘inst/doc’ exists. (Thanks to Sebastian Meyer's PR#18156.)
When an R documentation (‘help’ source) file ‘man/foo.Rd’ in a package has \donttest{..} examples with a syntax error, it is now signalled as ERROR and with correct line numbers relating to the ‘*-Ex.R’ file, thanks to Duncan Murdoch and Sebastian Meyer's reports and patch proposals in PR#17501.
Improved determination the correct translation domain in non-base packages, addressing the combination of PR#18092 and PR#17998 (‘#c6’) with reports and _augmented_ patch #2904 by Suharto Anggono.
Note that ‘"R-base"’ is no longer the default domain e.g., for top-level calls to ‘gettext()’; rather translation needs explicit ‘domain = *’ specification in such cases.
‘identical(attrib.as.set=FALSE)’ now works correctly with data frames with default row names (Thanks to Charlie Gao's PR#18179).
‘txtProgressBar()’ now enforces a non-zero width for argument ‘char’, without which no progress can be visible.
‘dimnames(table(d))’ is more consistent in the case where ‘d’ is a list with a single component, thanks to Thomas Soeiro's report to R-devel.
Further, ‘table(d1, d2)’ now gives an error when ‘d1’ and ‘d2’ are data frames as suggested by Thomas in PR#18224.
Fix for drawing semi-transparent lines and fills on the native Windows graphics device (PR#18219 and PR#16694). Thanks to Nick Ray for helpful diagnosis on Bugzilla.
The deparser now wraps sub-expressions such as ‘if(A) .. ’ with parentheses when needed; thanks to Duncan Murdoch's PR#18232 and Lionel Henry's patches there.
‘remove.packages()’ no longer tries to uninstall ‘Priority: base’ packages, thanks to a report and suggestions by Colin Fay in PR#18227.
‘win.metafile()’ now has ‘xpinch’ and ‘ypinch’ arguments so that the user can override Windows' (potentially wrong) guess at device dimensions.
‘x[i]’ and ‘x[[i]]’ for non-integer ‘i’ should now behave in all cases as always documented: the index used is equivalent to ‘as.integer(i)’ unless that would overflow where ‘trunc(i)’ is used instead; thanks to Suharto Anggono's report and patch proposals in PR#17977.
‘asOneSidedFormula()’ now associates the resulting formula with the global environment rather than the evaluation environment created for the call.
‘<bibentry>$name’ now matches the field name case-insensitively, consistent with ‘bibentry()’ creation and the replacement method.
‘cbind()’ failed to detect some length mismatches with a mixture of time-series and non-time-series inputs.
The default LaTeX style file ‘Sweave.sty’ used by the ‘RweaveLatex’ driver no longer loads the obsolete ‘ae’ package; thanks to a report by Thomas Soeiro in PR#18271. Furthermore, it now skips ‘\usepackage[T1]{fontenc}’ for engines other than pdfTeX (if detected) or if the new ‘[nofontenc]’ option is used.
‘smooth.spline()’ now stores its logical ‘cv’ argument more safely, fixing a rare bug when printing, and also stores ‘n’.
‘smooth.spline(x,y,*)’ now computes the ‘cv.crit’ statistic correctly, also when ‘is.unsorted(x)’, fixing PR#18294.
The ‘data.frame’ method of ‘rbind()’ now warns when binding not-wholly-recycling vectors, by analogy to the default method (for matrices).
‘setAs()’ finds the correct class for name ‘to’ when multiple packages define a class with that name. Thanks to Gabor Csardi for the report.
Fix for detaching a package when two classes of the same name are present in method signatures for the same generic. Thanks to Gabor Csardi for the report.
‘match.arg("", c("", "a", "B"))’ gives a better error message, in part from PR#17959, thanks to Elin Waring.
‘R CMD Sweave --clean’ no longer removes pre-existing files or subdirectories (PR#18242).
The ‘quartz()’ device no longer splits polylines into subpaths. That has caused narrowly-spaced lines with many points to always look solid even when dashed line type was used due to dash phase restarts.
Deparsing constructs such as ‘quote(1 + `!`(2) + 3)’ works again as before R 3.5.0, thanks to the report and patch in PR#18284 by Suharto Anggono.
‘as.list(f)’ for a ‘factor’ ‘f’ now keeps ‘names(f)’, fixing PR#18309.
‘qbeta(.001, .9, .009)’ and analogous ‘qf()’ calls now return a correct value instead of ‘NaN’ or wrongly ‘1’, all with a warning; thanks to the report by Ludger Goeminne in PR#18302.
‘plot.lm()’ failed to produce the plot of residuals vs. factor levels (i.e., ‘which=5’ when leverages are constant) for models with character predictors (PR#17840).
‘interaction.plot(..., xtick = TRUE)’ misplaced the x-axis line (PR#18305).
Not strictly fixing a bug, ‘format()’ing and ‘print()’ing of non-finite ‘Date’ and ‘POSIXt’ values ‘NaN’ and +/-‘Inf’ no longer show as ‘NA’ but the respective string, e.g., ‘Inf’, for consistency with numeric vector's behaviour, fulfilling the wish of PR#18308.
‘R CMD check’ no longer runs test scripts generated from corresponding ‘.Rin’ files twice and now signals an ERROR if processing an ‘.Rin’ script fails.
The graphics engine version, ‘R_GE_version’, has been bumped to ‘15’
and so packages that provide graphics devices should be reinstalled.
The ‘grid’ package now allows the user to specify a “vector” of pattern
fills. The ‘fill’ argument to ‘gpar()’ accepts a list of gradients
and/or patterns and the functions ‘linearGradient()’,
‘radialGradient()’, and ‘pattern()’ have a new ‘group’ argument.
Points grobs (data symbols) can now also have a pattern fill.
The ‘grobCoords()’ function now returns a more informative and complex result.
The ‘grid’ package has new functions for drawing isolated groups:
‘grid.group()’, ‘grid.define()’, and ‘grid.use()’. These functions add
compositing operators and affine transformations to R's graphics
capabilities.
The ‘grid’ package also has new functions for stroking and filling paths: ‘grid.stroke()’, ‘grid.fill()’, and ‘grid.fillStroke()’.
A new function ‘as.path()’ allows the user to specify the fill rule for a path that is to be used for clipping, stroking, or filling; available options are ‘"winding"’ and ‘"evenodd"’. A new function ‘as.mask()’ allows the user to specify the type of a mask; available options are ‘"alpha"’ and ‘"luminance"’.
These new features are only supported so far (at most) on the Cairo-based graphics devices and on the ‘pdf()’ device.
‘dev.capabilities()’ reports on device support for the new features.
‘par()’ now warns about unnamed non-character arguments to prevent
misuse such as ‘{usr <- par("usr"); par(usr)}’.
R uses UTF-8 as the native encoding on recent Windows systems (at least
Windows 10 version 1903, Windows Server 2022 or Windows Server 1903).
As a part of this change, R uses UCRT as the C runtime. UCRT should be
installed manually on systems older than Windows 10 or Windows Server
2016 before installing R.
The default personal library on Windows, folder ‘R\win-library\x.y’
where ‘x.y’ stands for R release ‘x.y.z’, is now a subdirectory of
Local Application Data directory (usually a hidden directory
‘C:\Users\username\AppData\Local’). Use ‘shell.exec(.libPaths()[1])’
from R to open the personal library in Explorer when it is first in the
list (PR#17842).
R uses a new 64-bit Tcl/Tk bundle. The previous 32-bit/64-bit bundle
had a different layout and can no longer be used.
Make files and installer scripts for Windows have been tailored to
‘Rtools42’, the newly recommended 64-bit ‘gcc’ 10.3 MinGW-W64 UCRT
toolchain.
‘Rtools42’ by default uses the Windows security features ASLR and DEP;
hence CRAN builds of R and packages also do.
R now supports files ‘Makevars.ucrt’, ‘Makefile.ucrt’, ‘configure.ucrt’
and ‘cleanup.ucrt’ in packages, which are used in preference to the
‘.win’ variants. This allows keeping the ‘.win’ files around to
support older versions of R. This feature will be removed in the
future once support for older versions of R would no longer be needed.
‘R.version’ gains a new field ‘crt’ (only on Windows) to denote the C
runtime. The value is ‘"ucrt"’.
On Windows, ‘download.file(method = "auto")’ and ‘url(method =
"default")’ now follow Unix in using ‘"libcurl"’ for all except
‘file://’ URIs.
‘Rtools42’ includes an unpatched Msys2 build of GNU ‘tar’. Paths
including drive letters can be made to work by adding ‘--force-local’
to environment variable ‘TAR_OPTIONS’. (‘Rtools40’ and earlier
included a patched version which defaulted to this option.)
Installer builds of R automatically find the ‘Rtools42’ software
collection as well as the compiler toolchain. No ‘PATH’ setting is
required from the user.
The default installation directory of R for a user-only installation
has been changed to the User Program Files directory (usually a hidden
directory ‘C:\Users\username\AppData\Local\Programs’) to follow Windows
conventions. Use ‘shell.exec(R.home())’ from R to open the R
installation directory in Explorer (PR#17842).
R now supports installation-time patching of packages. Patches may be
installed from a supplied URL or a local directory or disabled.
Patches are included into the installed packages for reference. This
experimental feature may be removed in the future.
‘libcurl’ is now required for building from source.
The clipboard connection now works also with text in other than the
current native encoding (PR#18267, with Hiroaki Yutani). Text is
always pasted to the clipboard in UTF16-LE and the ‘encoding’ argument
is ignored.
The internal case-changing functions are now used by default on Windows
- this circumvents problems (for example with E acute) of the UCRT
Windows' runtime.
R on Windows now uses the system memory allocator. Doug Lea's
allocator was used since R 1.2.0 to mitigate performance limitations
seen with system allocators on earlier versions of Windows.
‘memory.limit()’ and ‘memory.size()’ are now stubs on Windows (as on
Unix-alikes).
Applications embedding R on Windows can now use additional callbacks,
which have so far only been available only on Unix (PR#18286).
‘R CMD check’ can optionally report files/directories left behind in
home, ‘/tmp’ (even though ‘TMPDIR’ is set) and other directories. See
the “R Internals” manual for details.
‘R CMD check’ now reports byte-compilation errors during installation.
These are not usually fatal but may result in parts of the package not
being byte-compiled.
‘_R_CHECK_DEPENDS_ONLY_’ can be applied selectively to examples, tests
and/or vignettes in ‘R CMD check’: see the “R Internals” manual.
‘_R_CHECK_SRC_MINUS_W_IMPLICIT_’ now defaults to true: recent versions
of Apple ‘clang’ on macOS have made implicit function declarations in C
into a compilation error.
‘R CMD check --as-cran’ makes use of the environment variable
‘AUTORECONF’. See the “R Internals” manual §8 for further details.
‘R CMD check --use-valgrind’ also uses ‘valgrind’ when re-building
vignettes as some non-Sweave vignettes unhelpfully comment out all
their code when ‘R CMD check’ runs vignettes.
Errors in re-building vignettes (unless there are LaTeX errors) are
reported by ‘R CMD check’ as ‘ERROR’ rather than ‘WARNING’ when running
vignettes has been skipped (as it frequently is in CRAN checks and by
‘--as-cran’).
‘R CMD Rd2pdf’ gains a ‘--quiet’ option that is used by ‘R CMD build’
when building the PDF package manual.
‘R CMD Rd2pdf’ now always runs LaTeX in batch mode, consistent with
Texinfo >= 6.7. The ‘--batch’ option is ignored.
‘R CMD build’ and ‘R CMD check’ now include the Rd file name and line
numbers in the error message of an \Sexpr evaluation failure.
The (non-default and deprecated) ‘method = "internal"’ for
‘download.file()’ and ‘url()’ no longer supports ‘http://’ nor ‘ftp://’
URIs. (It is used only for ‘file://’ URIs.)
On Windows, ‘download.file(method = "wininet")’ no longer supports ‘ftp://’ URIs. (It is no longer the default method, which is ‘"libcurl"’ and does.)
On Windows, the deprecated ‘method = "wininet"’ now gives a warning for ‘http://’ and ‘https://’ URIs for both ‘download.file()’ and ‘url()’. (It is no longer the default method.)
On Windows, the command-line option ‘--max-mem-size’ and environment
variable ‘R_MAX_MEM_SIZE’ are defunct. The memory allocation limit was
important for 32-bit builds, but these are no longer supported.
‘default.stringsAsFactors()’ is now formally deprecated, where that was
only mentioned on its regular help page, previously. So it now gives a
warning if called.
‘unix.time()’ is defunct now; it had been deprecated since R 3.4.0.
Setting ‘digits = 0’ in ‘format()’, ‘print.default()’ (and hence
typically ‘print()’) or ‘options()’ is again invalid. Its behaviour
was platform-dependent, and it is unclear what “zero significant
digits” should mean (PR#18098).
Messages from C code in the ‘cairo’ section of package ‘grDevices’ are
now also offered for translation, thanks to Michael Chirico's PR#18123.
‘mean(x)’ with finite ‘x’ now is finite also without "long.double"
capability.
‘R CMD Rd2pdf’ no longer leaves an empty build directory behind when it
aborts due to an already existing output file. (Thanks to Sebastian
Meyer's PR#18141.)
‘density(x, weights = w, na.rm = TRUE)’ when ‘anyNA(x)’ is true, now
removes weights “in parallel” to ‘x’, fixing PR#18151, reported by
Matthias Gondan. Additionally, it gets a ‘subdensity’ option.
Conversion of \Sexpr[]{<expR>} to LaTeX or HTML no longer produces long
blocks of empty lines when ‘<expR>’ itself contains several lines all
producing empty output. Thanks to a report and patch by Ivan Krylov
posted to R-devel.
‘R CMD build’ no longer fails if a package vignette uses child
documents and ‘inst/doc’ exists. (Thanks to Sebastian Meyer's
PR#18156.)
When an R documentation (‘help’ source) file ‘man/foo.Rd’ in a package
has \donttest{..} examples with a syntax error, it is now signalled as
ERROR and with correct line numbers relating to the ‘*-Ex.R’ file,
thanks to Duncan Murdoch and Sebastian Meyer's reports and patch
proposals in PR#17501.
Improved determination the correct translation domain in non-base
packages, addressing the combination of PR#18092 and PR#17998 (‘#c6’)
with reports and _augmented_ patch #2904 by Suharto Anggono.
Note that ‘"R-base"’ is no longer the default domain e.g., for top-level calls to ‘gettext()’; rather translation needs explicit ‘domain = *’ specification in such cases.
‘identical(attrib.as.set=FALSE)’ now works correctly with data frames
with default row names (Thanks to Charlie Gao's PR#18179).
‘txtProgressBar()’ now enforces a non-zero width for argument ‘char’,
without which no progress can be visible.
‘dimnames(table(d))’ is more consistent in the case where ‘d’ is a list
with a single component, thanks to Thomas Soeiro's report to R-devel.
Further, ‘table(d1, d2)’ now gives an error when ‘d1’ and ‘d2’ are data frames as suggested by Thomas in PR#18224.
Fix for drawing semi-transparent lines and fills on the native Windows
graphics device (PR#18219 and PR#16694). Thanks to Nick Ray for
helpful diagnosis on Bugzilla.
The deparser now wraps sub-expressions such as ‘if(A) .. ’ with
parentheses when needed; thanks to Duncan Murdoch's PR#18232 and Lionel
Henry's patches there.
‘remove.packages()’ no longer tries to uninstall ‘Priority: base’
packages, thanks to a report and suggestions by Colin Fay in PR#18227.
‘win.metafile()’ now has ‘xpinch’ and ‘ypinch’ arguments so that the
user can override Windows' (potentially wrong) guess at device
dimensions.
‘x[i]’ and ‘x[[i]]’ for non-integer ‘i’ should now behave in all cases
as always documented: the index used is equivalent to ‘as.integer(i)’
unless that would overflow where ‘trunc(i)’ is used instead; thanks to
Suharto Anggono's report and patch proposals in PR#17977.
‘asOneSidedFormula()’ now associates the resulting formula with the
global environment rather than the evaluation environment created for
the call.
‘<bibentry>$name’ now matches the field name case-insensitively,
consistent with ‘bibentry()’ creation and the replacement method.
‘cbind()’ failed to detect some length mismatches with a mixture of
time-series and non-time-series inputs.
The default LaTeX style file ‘Sweave.sty’ used by the ‘RweaveLatex’
driver no longer loads the obsolete ‘ae’ package; thanks to a report by
Thomas Soeiro in PR#18271. Furthermore, it now skips
‘\usepackage[T1]{fontenc}’ for engines other than pdfTeX (if detected)
or if the new ‘[nofontenc]’ option is used.
‘smooth.spline()’ now stores its logical ‘cv’ argument more safely,
fixing a rare bug when printing, and also stores ‘n’.
‘smooth.spline(x,y,*)’ now computes the ‘cv.crit’ statistic correctly,
also when ‘is.unsorted(x)’, fixing PR#18294.
The ‘data.frame’ method of ‘rbind()’ now warns when binding
not-wholly-recycling vectors, by analogy to the default method (for
matrices).
‘setAs()’ finds the correct class for name ‘to’ when multiple packages
define a class with that name. Thanks to Gabor Csardi for the report.
Fix for detaching a package when two classes of the same name are
present in method signatures for the same generic. Thanks to Gabor
Csardi for the report.
‘match.arg("", c("", "a", "B"))’ gives a better error message, in part
from PR#17959, thanks to Elin Waring.
‘R CMD Sweave --clean’ no longer removes pre-existing files or
subdirectories (PR#18242).
The ‘quartz()’ device no longer splits polylines into subpaths. That
has caused narrowly-spaced lines with many points to always look solid
even when dashed line type was used due to dash phase restarts.
Deparsing constructs such as ‘quote(1 + `!`(2) + 3)’ works again as
before R 3.5.0, thanks to the report and patch in PR#18284 by Suharto
Anggono.
‘as.list(f)’ for a ‘factor’ ‘f’ now keeps ‘names(f)’, fixing PR#18309.
‘qbeta(.001, .9, .009)’ and analogous ‘qf()’ calls now return a correct
value instead of ‘NaN’ or wrongly ‘1’, all with a warning; thanks to
the report by Ludger Goeminne in PR#18302.
‘plot.lm()’ failed to produce the plot of residuals vs. factor levels
(i.e., ‘which=5’ when leverages are constant) for models with character
predictors (PR#17840).
‘interaction.plot(..., xtick = TRUE)’ misplaced the x-axis line
(PR#18305).
Not strictly fixing a bug, ‘format()’ing and ‘print()’ing of non-finite
‘Date’ and ‘POSIXt’ values ‘NaN’ and +/-‘Inf’ no longer show as ‘NA’
but the respective string, e.g., ‘Inf’, for consistency with numeric
vector's behaviour, fulfilling the wish of PR#18308.
‘R CMD check’ no longer runs test scripts generated from corresponding
‘.Rin’ files twice and now signals an ERROR if processing an ‘.Rin’
script fails.
The ‘formula’ method of ‘aggregate()’ now matches the generic in naming
its first argument ‘x’ (resolving PR#18299 by Thomas Soeiro).
This means that calling ‘aggregate()’ with a formula as a named first argument requires name ‘formula’ in earlier versions of R and name ‘x’ now, so portable code should not name the argument (code in many packages did).
Calling ‘if()’ or ‘while()’ with a condition of length greater than one
gives an error rather than a warning. Consequently, environment
variable ‘_R_CHECK_LENGTH_1_CONDITION_’ no longer has any effect.
Windows users should consult the WINDOWS section below for some
profound changes including
• Support for 32-bit builds has been dropped.
• UTF-8 locales are used where available.
• The default locations for the R installation and personal library folder have been changed.
Thanks to Tomas Kalibera for months of work on the Windows port for this release.
Calling ‘&&’ or ‘||’ with either argument of length greater than one is now an error. [Delayed until ca 200 packages have been updated.]
‘matrix(x, n, m)’ now warns in more cases where ‘length(x)’ differs
from ‘n * m’, as suggested by Abby Spurdle and Wolfgang Huber in Feb
2021 on the R-devel mailing list.
This warning can be turned into an error by setting environment variable ‘_R_CHECK_MATRIX_DATA_’ to ‘TRUE’: ‘R CMD check --as-cran’ does so unless it is already set.
Function ‘file_test()’ in package ‘utils’ gains tests for symlinks,
readability and writability.
‘capabilities("libxml")’ is now false.
The description of ‘capabilities("http/ftp")’ now reflects that it refers to the default method, no longer the internal one.
‘simplify2array()’ gains an ‘except’ argument for controlling the
exceptions used by ‘sapply()’.
Environment variables ‘R_LIBS_USER’ and ‘R_LIBS_SITE’ are both now set
to the R system default if unset or empty, and can be set to ‘NULL’ to
indicate an empty list of user or site library directories.
The warning for ‘axis()’(-like) calls in cases of relatively small
ranges (typically in log-scale situations) is slightly improved _and_
suppressed from explicit calls to ‘.axisPars()’ as has always been the
intention.
The ‘contrasts’ setter function ‘`contrasts<-`’ gains an explicit
default ‘how.many = NULL’ rather than just using ‘missing(how.many)’.
‘grid.pretty()’ gains a new optional argument ‘n = 5’.
There is a new function ‘.pretty()’ with option ‘bounds’ as a
technical-utility version of ‘pretty()’. It and ‘pretty()’ gain a new
argument ‘f.min’ with a better than back-compatible default.
Function ‘grDevices::axisTicks()’ and related functions such as
‘graphics::axis()’ work better, notably for the log scale; partly
because of the ‘pretty()’ improvements, but also because care is taken
e.g., when ‘ylim’ is finite but ‘diff(ylim)’ is infinite.
‘nclass.FD()’ gains a ‘digits’ option.
The R Mathlib internal C function ‘bd0()’ (called indirectly from a
dozen probability density and distribution functions such as ‘dpois()’,
‘dbinom()’, ‘dgamma()’, ‘pgamma()’ _etc_) has been complemented by a
more sophisticated and (mostly) more accurate C function ‘ebd0()’,
currently called only by internal ‘dpois_raw()’ improving accuracy for
R level ‘dpois()’ and potentially others calling it such as
‘dnbinom()’, ‘dgamma()’ or ‘pgamma()’. (Thanks to Morten Welinder's
PR#15628.)
‘write.ftable()’ gains ‘sep = " "’ argument as suggested by Thomas
Soeiro.
The names of the locale categories supported by R's ‘Sys.getlocale()’
and ‘Sys.setlocale()’ are now provided by variable ‘.LC.categories’ in
the ‘base’ namespace.
The ‘Date’ and ‘POSIXt’ methods for ‘hist()’ and the ‘histogram’ method
for ‘plot()’ now also use the new default ‘col = "lightgray"’ in
consistency with the corresponding change to ‘hist()’'s default for R
4.0.0.
‘hist.default()’ gains new ‘fuzz’ argument, and the histogram ‘plot’
method no longer uses fractional axis ticks when displaying counts
(‘"Frequency"’).
‘mapply()’ and hence ‘Map()’ now also obey the “max-or-0-if-any”
recycling rule, such that, e.g., ‘Map(`+`, 1:3, 1[0])’ is valid now.
‘as.character(<obj>)’ for ‘"hexmode"’ or ‘"octmode"’ objects now
fulfils the important basic rule ‘as.character(x)[j] ===
as.character(x[j])’.
‘substr(ch, start,end) <- new’ now e.g., preserves ‘names(ch)’; ditto
for ‘substring()’, thanks to a patch from Brodie Gaslam.
‘plot(<lm>)’ gains a ‘extend.ylim.f’ argument, in partial response to
PR#15285; further PR#17784 is fixed thanks to several contributors and
a patch by Elin Waring. The Cook's dist contours get customizable via
‘cook.col’ and ‘cook.lty’ with a different default color and their
legend is nicer by default and customizable via ‘cook.legendChanges’.
Attempting to subset an object that is not subsettable now signals an
error of class ‘notSubsettableError’. The non-subsettable object is
contained in the ‘object’ field of the error condition.
Subscript-out-of-bounds errors are now signaled as errors of class
‘subscriptOutOfBoundsError’.
Stack-overflow errors are now signaled as errors inheriting from class
‘stackOverflowError’. See ‘?stackOverflowError’ for more details.
New partly experimental ‘Sys.setLanguage()’ utility, solving the main
problem of PR#18055.
‘gettext()’ and ‘gettextf()’ get a new option ‘trim = TRUE’ which when
set to false allows translations for strings such as ‘"Execution
halted\n"’ typical for C code.
An experimental implementation of hash tables is now available. See
‘?hashtab’ for more details.
‘identical()’ gains a ‘extptr.as.ref’ argument for requesting that
external pointer objects be compared as reference objects.
‘reorder()’ gets an argument ‘decreasing’ which it passes to ‘sort()’
for level creation; based on the wish and patch by Thomas Soeiro in
PR#18243.
‘as.vector()’ gains a ‘data.frame’ method which returns a simple named
list, also clearing a long standing ‘FIXME’ to enable
‘as.vector(<data.frame>, mode="list")’. This breaks code relying on
‘as.vector(<data.frame>)’ to return the unchanged data frame.
‘legend()’ is now vectorized for arguments ‘cex’, ‘x.intersp’, and
‘text.width’. The latter can now also be specified as a vector (one
element for each column of the legend) or as ‘NA’ for computing a
proper column wise maximum value of ‘strwidth(legend)’. The argument
‘y.intersp’ can be specified as a vector with one entry for each row of
the legend.
‘legend()’ also gains new arguments ‘title.cex’ and ‘title.font’. Thanks to Swetlana Herbrandt.
Deparsing no longer remaps attribute names ‘dim’, ‘dimnames’, ‘levels’,
‘names’ and ‘tsp’ to historical S-compatible names (which ‘structure()’
maps back).
‘sample()’ and ‘sample.int()’ have additional sanity checks on their
‘size’ and ‘n’ arguments.
‘all.equal.numeric()’ gains a sanity check on its ‘tolerance’ argument - calling ‘all.equal(a, b, c)’ for three numeric vectors is a surprisingly common error.
‘mean(na.rm =)’, ‘rank(na.last =)’, ‘barplot(legend.text =)’, ‘boxplot()’, ‘contour(drawlabels =)’, ‘polygon(border =)’ and ‘methods::is(class2 =)’ have more robust sanity checks on their arguments.
‘R CMD Rd2pdf’ (used by ‘R CMD check’) has a more robust sanity check on the format of ‘\alias{}’ commands.
‘psigamma(x, deriv)’ for negative ‘x’ now also works for ‘deriv = 4’
and ‘5’; their underlying C level ‘dpsifn()’ is documented in ‘Writing
R Extensions’.
The HTML help system now uses HTML5 (wish of PR#18149).
‘ks.test()’ now provides exact p-values also with ties and MC p-values
in the two-sample (Smirnov) case. By Torsten Hothorn.
‘ks.test()’ gains a formula interface, with ‘y ~ 1’ for the one-sample
(Kolmogorov) test and ‘y ~ group’ for the two-sample (Smirnov) test.
Contributed by Torsten Hothorn.
The return value from ‘ks.test()’ now has class ‘c("ks.test", "htest")’
- packages using ‘try()’ need to take care to use ‘inherits()’ and not
‘==’ on the class.
‘iconv()’ now allows ‘sub = "c99"’ to use C99-style escapes for UTF-8
inputs which cannot be converted to encoding ‘to’.
In a forward pipe ‘|>’ expression it is now possible to use a named
argument with the placeholder ‘_’ in the ‘rhs’ call to specify where
the ‘lhs’ is to be inserted. The placeholder can only appear once on
the ‘rhs’.
The included LAPACK sources have been updated to version 3.10.0, except
for the four Fortran 77 routines which 3.10.0 has re-implemented in
Fortran 90 (where the older versions have been retained as the R build
process does not support Fortran 90).
‘path.expand()’ and most other uses of tilde expansion now warn if a
path would be too long if expanded. (An exception is ‘file.exists()’,
which silently returns false.)
‘trunc(<Date>, *)’ now supports ‘units = "months"’ or ‘"years"’ for
consistency with the ‘POSIXt’ method, thanks to Dirk Eddelbuettel's
proposal in PR#18099.
The HTML help system has several new features: LaTeX-like math can be
typeset using either KaTeX or MathJax, usage and example code is
highlighted using Prism, and for dynamic help the output of examples
and demos can be shown within the browser if the ‘knitr’ package is
installed. These features can be disabled by setting the environment
variable ‘_R_HELP_ENABLE_ENHANCED_HTML_’ to a false value.
Placeholder.
Facilities for accessing ‘ftp://’ sites are no longer tested (except
_pro tem_ for ‘curlGetHeaders()’) as modern browsers have removed
support.
R can now be built with ‘DEFS = -DSTRICT_R_HEADERS’, but not yet some
of the recommended packages.
A system installation of LAPACK 3.10.0 or later will be preferred to the version in the R Sources. [In progress.]
‘R CMD INSTALL’ no longer tangles vignettes. This completes an ‘R CMD
build’ change in R 3.0.0 and affects packages built before R 3.0.2.
Such packages should be re-made with ‘R CMD build’ to have the tangled
R code of vignettes shipped with the tarball.
Package installation speed for packages installed with ‘keep.source’
has been improved. This resolve the issue reported by Ofek Shilon in
PR#18236.
‘USE_FC_LEN_T’ is the default: this uses the correct prototypes for Fortran BLAS/LAPACK routines called from C/C++, and requires adjustment of most such calls - see ‘Writing R Extensions’. [In progress.]
The non-API header ‘R_ext/R-ftp-http.h’ is no longer provided, as the
entry points it covered are now all defunct.
A number of non-API declarations and macro definitions have been moved
from the installed header ‘Rinternals.h’ to the internal header
‘Defn.h’. Packages that only use entry points and definitions
documented to be part of the API as specified in ‘Writing R Extensions’
§6 should not be affected.
The macro ‘USE_RINTERNALS’ no longer has any effect when compiling
package code. Packages which also use ‘R_NO_REMAP’ will need to ensure
that the remapped names are used for calls to API functions that were
formerly also made available as macros.
The deprecated legacy S-compatibility macros ‘PROBLEM’, ‘MESSAGE’,
‘ERROR’, ‘WARN’, ‘WARNING’, ‘RECOVER’, ... are no longer defined in
‘R_exts/RS.h’ (included by ‘R.h’). Replace these by calls to
‘Rf_error’ and ‘Rf_warning’ (defined in header ‘R_ext/Error.h’ included
by ‘R.h’).
Header ‘R_ext/RS.h’ no longer includes ‘R_ext/Error.h’.
Header ‘R_ext/Constants.h’ (included by ‘R.h’) when included from C++
now includes the C++ header ‘cfloat’ rather than the C header ‘float.h’
(now possible as C++11 is required).
The deprecated S-compatibility macros ‘SINGLE_*’ in ‘R_ext/Constants.h’
(included by ‘R.h’) have been removed.
‘R_Calloc’, ‘R_Free’ and ‘R_Realloc’ are preferred to their unprefixed
forms and error messages now use the prefix. These forms were
introduced in R 3.4.0 and are available even when ‘STRICT_R_HEADERS’ is
defined.
‘rmultinom’ has been documented in ‘Writing R Extensions’ §6 so is now
part of the R API.
Similarly, ‘Rtanpi’, called from R level ‘tanpi()’ is now part of the R
API.
The long-deprecated, undocumented and non-API entry point ‘call_R’ is
no longer declared in ‘R_ext/RS.h’ (included by ‘R.h’).
The header ‘S.h’ which has been unsupported since Jan 2016 has been
removed. Use ‘R.h’ instead.
The deprecated S-compatibility macros ‘DOUBLE_*’ in ‘R_ext/Constants.h’ (included by ‘R.h’) have been removed. [Scheduled for Apr 23.]
‘trunc(<Date>, *)’ now supports ‘units = "months"’ or ‘"years"’ for consistency with the ‘POSIXt’ method, thanks to Dirk Eddelbuettel's proposal in PR#18099.
The HTML help system has several new features: LaTeX-like math can be typeset using either KaTeX or MathJax, usage and example code is highlighted using Prism, and for dynamic help the output of examples and demos can be shown within the browser if the ‘knitr’ package is installed. These features can be disabled by setting the environment variable ‘_R_HELP_ENABLE_ENHANCED_HTML_’ to a false value.
The ‘grid’ package now allows the user to specify a “vector” of pattern fills. The ‘fill’ argument to ‘gpar()’ accepts a list of gradients and/or patterns and the functions ‘linearGradient()’, ‘radialGradient()’, and ‘pattern()’ have a new ‘group’ argument.
Points grobs (data symbols) can now also have a pattern fill.
The ‘grobCoords()’ function now returns a more informative and complex result.
‘Rtools42’ by default uses the Windows security features ASLR and DEP; hence CRAN builds of R and packages also do.
‘R.version’ gains a new field ‘crt’ (only on Windows) to denote the C runtime. The value is ‘"ucrt"’.
‘Rtools42’ includes an unpatched Msys2 build of GNU ‘tar’. Paths including drive letters can be made to work by adding ‘--force-local’ to environment variable ‘TAR_OPTIONS’. (‘Rtools40’ and earlier included a patched version which defaulted to this option.)
The clipboard connection now works also with text in other than the current native encoding (PR#18267, with Hiroaki Yutani). Text is always pasted to the clipboard in UTF16-LE and the ‘encoding’ argument is ignored.
Improved determination the correct translation domain in non-base packages, addressing the combination of PR#18092 and PR#17998 (‘#c6’) with reports and _augmented_ patch #2904 by Suharto Anggono.
Note that ‘"R-base"’ is no longer the default domain e.g., for top-level calls to ‘gettext()’; rather translation needs explicit ‘domain = *’ specification in such cases.
‘remove.packages()’ no longer tries to uninstall ‘Priority: base’ packages, thanks to a report and suggestions by Colin Fay in PR#18227.
‘R CMD Sweave --clean’ no longer removes pre-existing files or subdirectories (PR#18242).
The ‘quartz()’ device no longer splits polylines into subpaths. That has caused narrowly-spaced lines with many points to always look solid even when dashed line type was used due to dash phase restarts.
Not strictly fixing a bug, ‘format()’ing and ‘print()’ing of non-finite ‘Date’ and ‘POSIXt’ values ‘NaN’ and +/-‘Inf’ no longer show as ‘NA’ but the respective string, e.g., ‘Inf’, for consistency with numeric vector's behaviour, fulfilling the wish of PR#18308.
The HTML help system has several new features: LaTeX-like math can be typeset using either KaTeX or MathJax, usage and example code are highlighted using Prism, and for dynamic help the output of examples and demos can be shown within the browser if the ‘knitr’ package is installed. These features can be disabled by setting the environment variable ‘_R_HELP_ENABLE_ENHANCED_HTML_’ to a false value.
‘R CMD check’ no longer runs test scripts generated from corresponding ‘.Rin’ files twice and now signals an ERROR if processing an ‘.Rin’ script fails.
‘trunc(<Date>, *)’ now reacts to ‘units = "months"’ or ‘"years"’ in consistency with the ‘POSIXt’ method, thanks to Dirk Eddelbuettel's proposal in PR#18099.
Not strictly fixing a bug, ‘format()’ing and ‘print()’ing of non-finite ‘Date’ and ‘POSIXt’ values ‘NaN’ and +/-‘Inf’ no longer show as ‘NA’ but the respective string, e.g., ‘Inf’, in consistency with numeric vector's behaviour, fulfilling the wish of PR#18308.
‘path.expand()’ and most other uses of tilde expansion now warn if a path would be too long if expanded. (An exception is ‘file.exists()’, which silently returns false.)